Hello Torsten, I think I can answer Question 2.
When you use File > Save Entry As > EMBL Format, You actually have an option to "Add EMBL Header" (a little checkbox on the right hand side next to the folder file list). When this option is checked, artemis will prompt you with a pop-up to give your entry an entry ID. Later your file will have an "ID" line. Hope I helped, otherwise there's always Tim. Cheers, -- yealing -- On Thu, Mar 4, 2010 at 6:44 AM, Torsten Seemann < torsten.seem...@infotech.monash.edu.au> wrote: > Tim, > > > You could open up the EMBL file and select all CDS features. Then from > the > > File menu -> Write -> Amino Acids of Selected Features to Qualifier. This > > will add the /translation qualifier to the selected features. You can > then save that out. > > Wow - I learn a new feature of Artemis every week! (even after 7 years > of part time use) > > Related question 1 - is there any option to output them with the first > amino acid changed to "M" (Met) as is true for most bacterial proteins > ? > > Related question 2 - will the EMBL file Stefanie creates via GFF+Fasta > have a valid parseable EMBL header (the first line) ? > > --Torsten Seemann > --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash > University, AUSTRALIA > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users >
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