Hi Torsten, Stefanie, >> You could open up the EMBL file and select all CDS features. Then from the >> File menu -> Write -> Amino Acids of Selected Features to Qualifier. This >> will add the /translation qualifier to the selected features. You can then >> save that out. > > Wow - I learn a new feature of Artemis every week! (even after 7 years > of part time use) > > Related question 1 - is there any option to output them with the first > amino acid changed to "M" (Met) as is true for most bacterial proteins > ? >
It is obviously based on the translation table that can be selected from the Options menu in the window that opens when you run Artemis. > Related question 2 - will the EMBL file Stefanie creates via GFF+Fasta > have a valid parseable EMBL header (the first line) ? > Actually writing EMBL format from GFF does not work at the moment! It writes out GFF even though EMBL is selected. I have put a fix in the development version which you can get a copy of from: ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v12/v12.0.1/ (It makes a conversion based on the mappings in etc/key_mapping and etc/qualifier_mapping). Alternatively look at EMBOSS to do this. As for the header, Yealing is correct, you use the 'Add EMBL Header' checkbox ( on the right hand side next to the folder file list). Regards Tim _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
