Hi There are some useful examples on how to parse the output here:
http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00487.html You can get the selected sequence either by going to the View menu and clicking the 'Bases of Selection as FASTA', or from the File menu under the 'Write' option you can write out the bases of selection. Regards Tim On 6/27/10 10:10 AM, "sylee" <209ab...@gmail.com> wrote: > Dear Sir/Ma'am > > Hi, I am trying to view the comparison files using ACT tool. > I have been working with MUMmer, and I got the comparison file generated by > MUMmer (using NUCmer function -> .coords file). > as I know, ACT can read the output of MUMmer. > however, when loading the comparison file in ACT, I got error message about > comparison file format. > I don't know which files to use.. > Do I need a parser for my MUMmer output files? > If so, could you let me know how I can parse them using Python code? > (I am not a perl person..so if not a complete code, I cannot use them... ) > and, I have a one more question.. > using ACT tool, can I get the sequences when I selected a part of comparison > region? > > > Thank you very much for your time, > > > > Sincerely from Sun-Young Lee > > > ----------------------------------------------------- > Sun-Young Lee > > Laboratory of Genomics & Genomic Medicine > Lee Gil Ya Cancer and Diabetes Institute > Gachon University of Medicine and Science > > Tel : +82 32 899 6545 > Fax : +82 32 899 6519 > Mobile : +82 19 278 0920 > e-mail: sy...@gachon.ac.kr; 209ab...@gmail.com > ----------------------------------------------------- > > > _______________________________________________ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
