Hi Tim,
Thank you for your feedback. I will definitely try the two workarounds
you described for this dataset.
However, in the future, it would be great if Artemis were capable of
handling all use-cases, including the one where the multiple sequences
are loaded before the GFF3 features.
Regards,
Florent
On 02/08/11 01:37, Tim Carver wrote:
Hi Florent
Actually I need to correct myself. I did fix this for GFF files. If you add
the sequence to the end of the GFF file (see attached GFF changes to your
example) then it should correctly offset the features to the correct
sequence. For other file formats (EMBL, GenBank) this has not been
implemented.
Regards
Tim
On 8/1/11 2:47 PM, "Tim Carver"<t...@sanger.ac.uk> wrote:
Hi Florent
Apologies for not getting round to this. It has not been a priority here as
the EMBOSS application 'union' does this. I shall try and promote it up the
todo list.
Regards
Tim
On 8/1/11 7:28 AM, "Florent Angly"<florent.an...@gmail.com> wrote:
Hi,
I was trying Artemis to view some annotations I have in a multiFASTA and
GFF3 file. In my use case, it is not common to have this type of data. I
noticed a problem though, in that Artemis assigns all the GFF features
to the first sequence in the FASTA file (see attached screenshot). After
some research, I found that this issue has been reported 2-3 years ago:
http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00468.html
http://www.mail-archive.com/artemis-users@sanger.ac.uk/msg00401.html
Any chance that this will be fixed?
Regards,
Florent
PS/ I attached a subset of the contigs and annotations that illustrate
the bug.
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