Hi Pheobe
Maybe you could try sourcing the following before mri_motion_correct: source ~inverse/.cshrc I hope it helps. Ev On Sun, 13 Jan 2002, orphoebe wrote: > Hi, > > I've just setup the Oct 2001 version of freesurfer on my linux box. When I > tried to average 3 scans of the same subject using interactive mode, it > prompted: > > Convert(010722AZ) failed -- working on: > orig/002/COR-%03d > orig/001/COR-%03d > orig/003/COR-%03d > > In the log viewer, it showed: > ********************* > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_average -conform > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/002/COR-.info > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/003/COR-.info > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig > interpolating volume to be isotropic 1mm^3 > reading > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info... > mri_read(): couldn't determine type of file > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_average: > MRIread(/home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-. > info) failed > > Command Finished > ********************* > > After that, I exit the interactive mode and tried the mri_motion_correct, it > prompted: > > [phoebe@bunny orig]$ mri_motion_correct . 001 002 003 > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_convert > checking for mincresample... ERROR > mri_motion_correct: couldn't find mincresample > transcript of last command is in /tmp/mmc-transcript.1193 > cleaning up... > > I've checked the /homes/nmrnew/home/inverse/minc and there is no mincresample. > Do you know how to fix it and get the averaging done? > > Thanks. > > Phoebe. > --
