Hi Evelina, I'm using the freesurfer version downloaded from the webpage, instead of the one in the NMR center. I've followed the instructions in INSTALL to source the environment and csurf can be open. I've tried to source the environment again and setenv SUBJECTS_DIR, however, it didn't help the mri_motion_correct. Any suggestion?
Phoebe. Evelina Busa wrote: > Hi Pheobe > > Maybe you could try sourcing the following before mri_motion_correct: > > source ~inverse/.cshrc > > I hope it helps. > > Ev > > On Sun, 13 Jan 2002, orphoebe wrote: > > > Hi, > > > > I've just setup the Oct 2001 version of freesurfer on my linux box. When I > > tried to average 3 scans of the same subject using interactive mode, it > > prompted: > > > > Convert(010722AZ) failed -- working on: > > orig/002/COR-%03d > > orig/001/COR-%03d > > orig/003/COR-%03d > > > > In the log viewer, it showed: > > ********************* > > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_average -conform > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/002/COR-.info > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/003/COR-.info > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig > > interpolating volume to be isotropic 1mm^3 > > reading > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info... > > mri_read(): couldn't determine type of file > > /home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-.info > > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_average: > > MRIread(/home/phoebe/bin/freesurfer_alpha/subjects/010722AZ/mri/orig/001/COR-. > > info) failed > > > > Command Finished > > ********************* > > > > After that, I exit the interactive mode and tried the mri_motion_correct, it > > prompted: > > > > [phoebe@bunny orig]$ mri_motion_correct . 001 002 003 > > /home/phoebe/bin/freesurfer_alpha/bin/Linux/mri_convert > > checking for mincresample... ERROR > > mri_motion_correct: couldn't find mincresample > > transcript of last command is in /tmp/mmc-transcript.1193 > > cleaning up... > > > > I've checked the /homes/nmrnew/home/inverse/minc and there is no mincresample. > > Do you know how to fix it and get the averaging done? > > > > Thanks. > > > > Phoebe. > > > > --
begin:vcard n:Chan;Phoebe Suk-tak tel;fax:(852) 2764 6051 tel;work:(852) 2766 6095 x-mozilla-html:FALSE org:Hong Kong Polytechnic University;Department of Optometry and Radiography adr:;;Hunghom, Kowloon;;;;Hong Kong SAR, PRC version:2.1 email;internet:[EMAIL PROTECTED] title:Assistant Professor fn:Phoebe Suk-tak Chan end:vcard
