Hello all, There looks to be an egg problem with the latest galaxy-central, here are excepts from a failed Galaxy install on my TravisCI test setup, https://travis-ci.org/peterjc/pico_galaxy/builds/41233860
Here's another project build with the same error: https://travis-ci.org/peterjc/galaxy_blast/builds/41235899 $ ./run.sh --stop-daemon || true Initializing config/migrated_tools_conf.xml from migrated_tools_conf.xml.sample ... Initializing static/welcome.html from welcome.html.sample Some eggs are out of date, attempting to fetch... Fetched http://eggs.galaxyproject.org/Mako/Mako-0.4.1-py2.7.egg Fetched http://eggs.galaxyproject.org/importlib/importlib-1.0.3-py2.7.egg Fetched http://eggs.galaxyproject.org/pysam/pysam-0.4.2_kanwei_b10f6e722e9a-py2.7-linux-x86_64-ucs4.egg Fetched http://eggs.galaxyproject.org/ordereddict/ordereddict-1.1-py2.7.egg Fetched http://eggs.galaxyproject.org/Fabric/Fabric-1.7.0-py2.7.egg Fetched http://eggs.galaxyproject.org/Babel/Babel-1.3-py2.7.egg Fetched http://eggs.galaxyproject.org/Whoosh/Whoosh-0.3.18-py2.7.egg Fetched http://eggs.galaxyproject.org/Parsley/Parsley-1.1-py2.7.egg Fetched http://eggs.galaxyproject.org/Cheetah/Cheetah-2.2.2-py2.7-linux-x86_64-ucs4.egg Traceback (most recent call last): File "./scripts/fetch_eggs.py", line 46, in <module> c.resolve() # Only fetch eggs required by the config File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/eggs/__init__.py", line 347, in resolve egg.resolve() File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/eggs/__init__.py", line 192, in resolve if e.args[1].key != e.args[0].key: IndexError: tuple index out of range Fetch failed. No PID file exists in paster.pid $ python scripts/fetch_eggs.py Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched Traceback (most recent call last): File "scripts/fetch_eggs.py", line 46, in <module> c.resolve() # Only fetch eggs required by the config File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/eggs/__init__.py", line 347, in resolve egg.resolve() File "/home/travis/build/peterjc/pico_galaxy/galaxy-central-master/lib/galaxy/eggs/__init__.py", line 192, in resolve if e.args[1].key != e.args[0].key: IndexError: tuple index out of range The command "python scripts/fetch_eggs.py" failed and exited with 1 Looking at http://eggs.galaxyproject.org/MarkupSafe/ for Python 2.7 and Linux x86_64 there is a ucs4 egg: MarkupSafe-0.12-py2.7-linux-x86_64-ucs4.egg 09-Jun-2011 03:09 30724 So, why is this failing? Not I am not explicitly installing MakupSafe (so I do not expect there to be a conflicting version installed). Also it would seem there is a bug in the resolve method assuming that e.arg will always have (at least) two entries? Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
