Oops forgot to cc the list. On Nov 18, 2014 7:26 AM, "John Chilton" <jmchil...@gmail.com> wrote:
> I will admit to not actually understanding Galaxy's dependency management > but I think virtualenv is exactly the advice people who do understand it > give > http://dev.list.galaxyproject.org/Local-installation-problem-td4662627.html. > It is a widely used tool precisely designed to solve such problems - I > think it is the best way to go. I don't know why it would not be > appropriate for existing installations - I think it is in fact somethimg of > a "best practice" for existing installations. > > Certainly that error message should be more helpful but I am not sure we > should do anything to address this beyond that - do you have a particular > idea in mind? > On Nov 18, 2014 5:49 AM, "Peter Cock" <p.j.a.c...@googlemail.com> wrote: > >> On Mon, Nov 17, 2014 at 7:23 PM, John Chilton <jmchil...@gmail.com> >> wrote: >> > Ummm... I think it is that the VM started shipping with an >> > incompatible paramkio. >> > >> > [...] >> > >> > Anyway - planemo's TravisCI integration tests Galaxy in a virtualenv >> > and it works fine [...] >> >> That's a useful workaround, but a virtualenv is not viable for existing >> Galaxy installations - which may also come to have this problem if >> their system copy of paramiko is updated? >> >> I'm not familiar with paramiko or markupsafe, but if there is a conflict >> it would be good to have a direct fix. >> >> Peter >> >
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