Hi - subject netmats are in the main PTN download. Cheers.
> On 1 Jun 2017, at 15:05, Thomas Nichols <t.e.nich...@warwick.ac.uk> wrote: > > Hi Jenn, > > Sorry for the slow reply on this. We tried downloading the links you pointed > us to <https://db.humanconnectome.org/data/projects/HCP_1200>: > > The following links contain subject-specific CIFTI maps: subject-specific > versions of the group-ICA parcellations, with various ICA dimensionalities > applied. These are z-statistic maps generated using dual-regression. > > CIFTI Subject-specific Parcellations for 10-, 25-, 50-, 100-dimensionalities > (57GB) > <https://db.humanconnectome.org/app/action/ChooseDownloadResources?project=HCP_Resources&resource=GroupAvg&filePath=HCP_S900_PTNmaps_d15_25_50_100.zip> > CIFTI Subject-specific Parcellations for 200-dimensionality (55GB) > <https://db.humanconnectome.org/app/action/ChooseDownloadResources?project=HCP_Resources&resource=GroupAvg&filePath=HCP_S900_PTNmaps_d200.zip> > CIFTI Subject-specific Parcellations for 300-dimensionality (85GB > <https://db.humanconnectome.org/app/action/ChooseDownloadResources?project=HCP_Resources&resource=GroupAvg&filePath=HCP_S900_PTNmaps_d300.zip> > but they only contain the *dtseries.nii, while in previous releases there > were *pconn.nii files that had the "NetMat" matrices. > > To be clear, the previous *pconn.nii files had #dim rows, #dim cols, while > these *dtseries have #Elm rows and #dim cols. > > Is there some place that NetMats are currently released? I'm not finding > them. I know they're not impossible to recreate but I'd like to minimize > effort and chance of error by using the standard released product. > > -Tom > > > PS: Note that the webpage is incorrectly indicates that the parcellation size > is 10, 25, 50 and 100, when instead it is 15, 25, 50 & 100. > > > > On Tue, May 16, 2017 at 1:12 PM, Elam, Jennifer <e...@wustl.edu > <mailto:e...@wustl.edu>> wrote: > Hi Tom, > Due to size, we have the individual subject parcellations available in three > separate downloads for different dimensionalities under the main PTN download > on this page in the DB: https://db.humanconnectome.org/data/projects/HCP_1200 > <https://db.humanconnectome.org/data/projects/HCP_1200> > > Best, > Jenn > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School of Medicine > Department of Neuroscience, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > e...@wustl.edu <mailto:e...@wustl.edu> > www.humanconnectome.org <http://www.humanconnectome.org/> > > From: hcp-users-boun...@humanconnectome.org > <mailto:hcp-users-boun...@humanconnectome.org> > <hcp-users-boun...@humanconnectome.org > <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Thomas Nichols > <t.e.nich...@warwick.ac.uk <mailto:t.e.nich...@warwick.ac.uk>> > Sent: Tuesday, May 16, 2017 5:16:15 AM > To: HCP Users > Subject: [HCP-Users] Where are per-subject netmats? > > Hi folks, > > When poking through the PTN download for the netmats, we're having trouble > finding the netmat for each subject. > > As per the S1200 release manual > <http://www.humanconnectome.org/documentation/S1200/HCP_S1200_Release_Reference_Manual.pdf>, > pp 99-100, it says when we extract one of the flies like > netmats_3T_HCP820_MSMAll_ICAd*_ts*.tar.gz > we should get a *_netmat1 directory filled with "One netmat file per subject, > computed using full correlation, Z-transformed", and another variant in > *_netmat2. > > Instead, we find that these tar.gz files only have 5 files, in a directory > netmats/3T_HCP820_MSMAll_ICAd*_ts*. Two of these are netmat{1,2}.txt files, > but these are a single column and have a very strange number of rows (e.g. > for d=50 it has 820 rows). (There are also Mnet?.pconn.nii files, but these > are tiny). > > Where can we find the per-subject netmat files that were in previous releases? > > -Tom > > > -- > __________________________________________________________ > Thomas Nichols, PhD > Professor, Head of Neuroimaging Statistics > Department of Statistics & Warwick Manufacturing Group > University of Warwick, Coventry CV4 7AL, United Kingdom > > Web: http://warwick.ac.uk/tenichols <http://warwick.ac.uk/tenichols> > Email: t.e.nich...@warwick.ac.uk <mailto:t.e.nich...@warwick.ac.uk> > Tel, Stats: +44 24761 51086, WMG: +44 24761 50752 > Fx, +44 24 7652 4532 <tel:024%207652%204532> > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org> > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > <http://lists.humanconnectome.org/mailman/listinfo/hcp-users> > > > -- > __________________________________________________________ > Thomas Nichols, PhD > Professor of Neuroimaging Statistics > Oxford Big Data Institute > Li Ka Shing Centre for Health Information and Discovery > University of Oxford > > Interim Contact Info: > Web: http://warwick.ac.uk/tenichols <http://warwick.ac.uk/tenichols> > Email: t.e.nich...@warwick.ac.uk <mailto:t.e.nich...@warwick.ac.uk> > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Head of Analysis, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) st...@fmrib.ox.ac.uk http://www.fmrib.ox.ac.uk/~steve <http://www.fmrib.ox.ac.uk/~steve> --------------------------------------------------------------------------- Stop the cultural destruction of Tibet <http://smithinks.net/> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
