Sorry, made a mistake in my e-mail. I tried wb_command -volume-label-import and got the results explained previously. Any ideas?
Thanks, Sean On 20 June 2017 at 20:08, Glasser, Matthew <glass...@wustl.edu> wrote: > I think you want wb_command -volume-label-import. > > Peace, > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Seán Froudist > Walsh <froud...@tcd.ie> > Date: Tuesday, June 20, 2017 at 7:04 PM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] Custom visualisation help > > Hey all, > > I'm trying to get a colour display on a surface to match a colormap I have > set up in matlab, and have run into a whole world of pain. I would greatly > appreciate your help. > > I have created a label text file of the following format: > > TCpol_R > 1 255 208 208 1 > TCs_R > 2 255 158 158 1 > Amyg_R > 3 255 81 81 1 > PFCoi_R > 4 255 231 231 1 > > I additionally have a nifti file, and a func.gii surface file (created > with wb_command -volume-to-surface-mapping ) > > Ideally I would like to display those colours on the surface, in the > correct clusters. > > I thought I would try to display them on a volume as a first step, but > that hasn't gone smoothly either. > I used a command of the following format: > wb_command -cifti-label-import my_atlas.nii.gz my_label_table.txt > my_label_volume.nii.gz > > Then I tried to display the label file over the volume in wb_view to no > avail (I only see the underlying anatomical volume). Despite this, if I go > to > Overlay Tools --> Settings --> Edit Map's Labels > I can see all of the labels I wanted listed, next to the correct colours. > > I would greatly appreciate if you could help fill in the gaps in my > knowledge so that I can display my custom coloured labels on the surface. > > Many thanks, > > Sean > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
