The fourth "color" specifier in your text file should be 255, not 1.
Tim On Wed, Jun 21, 2017 at 8:34 AM, Seán Froudist Walsh <froud...@tcd.ie> wrote: > Sorry, made a mistake in my e-mail. I tried wb_command > -volume-label-import and got the results explained previously. Any ideas? > > Thanks, > > Sean > > On 20 June 2017 at 20:08, Glasser, Matthew <glass...@wustl.edu> wrote: > >> I think you want wb_command -volume-label-import. >> >> Peace, >> >> Matt. >> >> From: <hcp-users-boun...@humanconnectome.org> on behalf of Seán Froudist >> Walsh <froud...@tcd.ie> >> Date: Tuesday, June 20, 2017 at 7:04 PM >> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> >> Subject: [HCP-Users] Custom visualisation help >> >> Hey all, >> >> I'm trying to get a colour display on a surface to match a colormap I >> have set up in matlab, and have run into a whole world of pain. I would >> greatly appreciate your help. >> >> I have created a label text file of the following format: >> >> TCpol_R >> 1 255 208 208 1 >> TCs_R >> 2 255 158 158 1 >> Amyg_R >> 3 255 81 81 1 >> PFCoi_R >> 4 255 231 231 1 >> >> I additionally have a nifti file, and a func.gii surface file (created >> with wb_command -volume-to-surface-mapping ) >> >> Ideally I would like to display those colours on the surface, in the >> correct clusters. >> >> I thought I would try to display them on a volume as a first step, but >> that hasn't gone smoothly either. >> I used a command of the following format: >> wb_command -cifti-label-import my_atlas.nii.gz my_label_table.txt >> my_label_volume.nii.gz >> >> Then I tried to display the label file over the volume in wb_view to no >> avail (I only see the underlying anatomical volume). Despite this, if I go >> to >> Overlay Tools --> Settings --> Edit Map's Labels >> I can see all of the labels I wanted listed, next to the correct colours. >> >> I would greatly appreciate if you could help fill in the gaps in my >> knowledge so that I can display my custom coloured labels on the surface. >> >> Many thanks, >> >> Sean >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
