I always thought that it 'cleaning' it means that it would remove all those 
files, which is why I was so surprised that it didn't do it. I guess it has 
something to do with what is in the build.xml file, but I have never understood 
the ant build files well enough to mess with those....

> On May 27, 2016, at 10:30 AM, Robert Hanson <hans...@stolaf.edu> wrote:
> 
> yes, that's right. If you figure how to make "Project Clean" remove the build 
> files, that would be  great. We could set that up.
> 
> On Fri, May 27, 2016 at 9:10 AM, Kanters, Rene <rkant...@richmond.edu 
> <mailto:rkant...@richmond.edu>> wrote:
> I decided to keep an eye on the build folder and noticed that when I did a 
> 'Clean' project the files were not removed. I did an rm -rf in there to start 
> fresh, did a build and now it works...
> 
> René
> 
>> On May 27, 2016, at 9:05 AM, Kanters, Rene <rkant...@richmond.edu 
>> <mailto:rkant...@richmond.edu>> wrote:
>> 
>> Bob,
>> 
>> I did clean builds several times to no avail. I am building the Jmol.jar 
>> using an ant builder setup for the Properties of Jmol, where I specify it to 
>> use Jmol/build.xml buildfile. I think that when I run it directly in Eclipse 
>> is may use the Java Builder set up, but that one is not editable, so I can't 
>> tell what exactly that does.
>> 
>> I also did an 'override and update' to make sure that I pulled everything 
>> back as it is on the SVN server. The only files I did not allow to overwrite 
>> were the .externalToolBuilders/Jmol.jar.launch (which does not seem to have 
>> a version in SVN, probably something new in Mars.2), 
>> Settings/org.eclipse.jdt.core.pref and .project. (like I had before).
>> 
>> I do indeed not see the org/jmol/api/JmolBioResolver (and am somewhat 
>> surprised it isn't echoed as org.jmol.apl), so why is there a script that 
>> still seems to know about that and only needs it when I am running the 
>> Jmol.jar (using java -jar Jmol.jar) but not when I am running it from within 
>> eclipse?
>> 
>> René
>> 
>>> On May 27, 2016, at 1:44 AM, Robert Hanson <hans...@stolaf.edu 
>>> <mailto:hans...@stolaf.edu>> wrote:
>>> 
>>> JmolBioResolver was decommissioned. Perhaps you have not fully 
>>> synchronized. Try a clean build.
>>> 
>>> I have also added those to the release branch, 14.6.
>>> 
>>> On Thu, May 26, 2016 at 4:04 PM, Kanters, Rene <rkant...@richmond.edu 
>>> <mailto:rkant...@richmond.edu>> wrote:
>>> Hi,
>>> 
>>> I just synchronized after having made the changes in the qchem reader this 
>>> morning, and now find that the application when running in the Eclipse 
>>> Mars.2 (Release 4.5.2) run the app fine, but that the Jmol.jar I am 
>>> creating gives an error message when I try to measure things using the 
>>> console:
>>> 
>>> $ measure (c2)(c6)
>>> script ERROR: java.lang.NoSuchMethodError: 
>>> org.jmol.viewer.Viewer.getJBR()Lorg/jmol/api/JmolBioResolver;
>>> 
>>> Does anybody have any idea why that started happening?
>>> 
>>> René
>>> 
>>> 
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>>> 
>>> -- 
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr <http://www.stolaf.edu/people/hansonr>
>>> 
>>> 
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> 
> 
> -- 
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr <http://www.stolaf.edu/people/hansonr>
> 
> 
> If nature does not answer first what we want,
> it is better to take what answer we get. 
> 
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> 
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What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are 
consuming the most bandwidth. Provides multi-vendor support for NetFlow, 
J-Flow, sFlow and other flows. Make informed decisions using capacity 
planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e
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