This might explain the erratic behaviour. It seems to work now and then, with
not clear pattern.
Eve the simple example by Angel at
http://wiki.jmol.org/index.php/Loading_Notice , pasted in JSmol Console, is not
working. It will freeze while calculating, render the surface, and maybe draw
and erase the message in a fast sequence.
set echo top center;
echo "Calculating surface...";
refresh;
isosurface mySurface molecular;
echo;
Jaim
On Jan 15, 2014, at 7:03 PM, Robert Hanson
<hans...@stolaf.edu<mailto:hans...@stolaf.edu>> wrote:
echo and refresh will certainly work for this. But realize that there is no
updating it, because the calculation is not interruptable at all, including
updating any such message.
On Wed, Jan 15, 2014 at 6:18 AM, Jaime Prilusky
<jaime.prilu...@weizmann.ac.il<mailto:jaime.prilu...@weizmann.ac.il>> wrote:
I would like to have a message “Working …” while Jmol is calculating and
rendering.
The following script displays the message only while rendering.
There’s no message while calculating. I’ve added some refresh commands just in
case, but same result.
Tried with different representations instead of dots. Isosurface solvent is the
worst example, where there seems to be no activity at all for a long time, then
in a fast sequence I get the message, the rendering, and the message removed.
select all;
set echo middle center;
echo Working ...|Please wait;
font echo 20 ariel;
color echo green;
refresh;
dots 100%;
refresh;
set echo OFF;
Suggestions?
On Jan 13, 2014, at 3:25 PM, Robert Hanson
<hans...@stolaf.edu<mailto:hans...@stolaf.edu>> wrote:
That's right, too. In this case you are putting a script into the queue and
then immediately and independently firing the alert message. Your initial way
is correct; just add a REFRESH command prior to that if you want the model to
be displayed during the alert.
On Mon, Jan 13, 2014 at 6:21 AM, Jaime Prilusky
<jaime.prilu...@weizmann.ac.il<mailto:jaime.prilu...@weizmann.ac.il>> wrote:
Even if adding refresh to Jmol.script, the alert happens before the model gets
loaded:
Jmol.script(jmol0,'load data/123.pdb; select all; color blue; refresh;');
alert(“Back”);
Jaim
On Jan 13, 2014, at 2:03 PM, Angel Herráez
<angel.herr...@uah.es<mailto:angel.herr...@uah.es>> wrote:
> I agree that the use of refresh is often needed; that's my
> experience, in many occasions it's been key.
>
> However, the doc says otherwise:
> http://chemapps.stolaf.edu/jmol/docs/#refresh
>
> "(Unnecessary, and thus deprecated.)"
>
> I would remove that phrase, Bob :)
>
>
>
>
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it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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St. Olaf College
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it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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