I tried out what you wrote and didn't get an error with an *@auto-md* 
file.  It is only a tiny, simple file so maybe it's not enough of a test.  
Here is what I did:

1. Created an @auto-md file with the following structure:

@clean c:\temp\leo\md-test-at-auto-md.md
    Markdown Test Tree
        A1
            A1.1
                A1.1.1
        A2

2. I added a line *@others *to the top of the body of the top node.  I 
wrote a line or two for most of the nodes.  Then I saved the outline.
3. I added a new top-level node outside the *@auto-md* node.  I cloned node 
*A1* into it.
4. In the cloned *A1.1* node, I added a new line.
5. I observed in an external editor that the *@auto-md* file had the 
intended change.
6. I closed and reopened the outline.
7.  I did not see any corruption in the outline.

Could you write more detail about the *@auto-md* file that ended up with a 
corrupted outline, and whether you use an *@others* line in it?  And is 
this the only such file that caused a problem?  And also the version of Leo 
and the OS (though it doesn't seem likely that the OS is playing a part).
On Tuesday, May 23, 2023 at 1:58:13 PM UTC-4 Thomas Passin wrote:

> Maybe @clean or even @file would work for you (not that I've tried them 
> with clones, which I'll try out soon) instead of @auto-md.  I don't think  
> that @auto-md really gets you anything that they don't, although you will 
> need to put *@language md* at  the start of the body of the top node.
>
> On Tuesday, May 23, 2023 at 12:51:48 PM UTC-4 p.os...@datec.at wrote:
>
>> An example:
>>
>> @auto-md file1.md
>>     clone-node_1
>>     clone-node_2
>>
>> @auto-md file2.md
>>     clone-node_1
>>     clone-node_2
>>
>> Changes in a clone causes (don't know exactly when, probably when reading 
>> the LEO file) that the tree hierarchy is partially destroyed. The content 
>> remains, but ends up in a node that didn't exist before and whose heading 
>> consists of parts of the content.
>>
>> I think this could be prevented if @auto-md would only write. Do I see 
>> that right? And can I force this somehow?
>>
>> Best regards
>> Paul
>
>

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