The loss of clones is specific to *@auto-md* trees (although I have not 
tested other *@auto-xx* trees):

In an outline with both *@clean* and an *@auto-md* trees, when the outline 
is closed and re-opened, the clone nodes of the *@clean* tree remained but 
the clone nodes of the *@auto-md* tree were no longer clones.

I don't know what the original intention was with respect to *@auto-md *trees, 
but this seems like a serious bug to me.  I'll create an issue for it.

On Wednesday, May 24, 2023 at 10:10:34 AM UTC-4 Thomas Passin wrote:

> I see where the problem is - or at least *a* problem - is, and it's 
> serious. The problem I see is that when an outline with clones is 
> re-opened, the clones are no longer clones.  This did not happen when I 
> created some clones in my Workbook, so there are some conditions yet to be 
> determined. I'll experiment some more to try to pin it down.  The outline 
> which showed the problem had both an *@auto-md* and an *@clean* tree.  
> I'll try outlines with them separately and report back.
>
> On Wednesday, May 24, 2023 at 8:22:58 AM UTC-4 Thomas Passin wrote:
>
>> @Edward recently re-worked some of the importers.  If you can use the 
>> current version of the devel branch (in GitHub) it would be worth trying.  
>> Can you share a tree that suffers from the problem?  Or a minimal version 
>> that does?
>>
>> On Wednesday, May 24, 2023 at 5:12:30 AM UTC-4 p.os...@datec.at wrote:
>>
>>> Sorry, it's Leo 6.6.4 on Arch Linux.
>>>
>>> On Tuesday, May 23, 2023 at 8:17:44 PM UTC+2 tbp1...@gmail.com wrote:
>>>
>>>> I tried out what you wrote and didn't get an error with an *@auto-md* 
>>>> file.  It is only a tiny, simple file so maybe it's not enough of a test.  
>>>> Here is what I did:
>>>>
>>>> 1. Created an @auto-md file with the following structure:
>>>>
>>>> @clean c:\temp\leo\md-test-at-auto-md.md
>>>>     Markdown Test Tree
>>>>         A1
>>>>             A1.1
>>>>                 A1.1.1
>>>>         A2
>>>>
>>>> 2. I added a line *@others *to the top of the body of the top node.  I 
>>>> wrote a line or two for most of the nodes.  Then I saved the outline.
>>>> 3. I added a new top-level node outside the *@auto-md* node.  I cloned 
>>>> node *A1* into it.
>>>> 4. In the cloned *A1.1* node, I added a new line.
>>>> 5. I observed in an external editor that the *@auto-md* file had the 
>>>> intended change.
>>>> 6. I closed and reopened the outline.
>>>> 7.  I did not see any corruption in the outline.
>>>>
>>>> Could you write more detail about the *@auto-md* file that ended up 
>>>> with a corrupted outline, and whether you use an *@others* line in 
>>>> it?  And is this the only such file that caused a problem?  And also the 
>>>> version of Leo and the OS (though it doesn't seem likely that the OS is 
>>>> playing a part).
>>>> On Tuesday, May 23, 2023 at 1:58:13 PM UTC-4 Thomas Passin wrote:
>>>>
>>>>> Maybe @clean or even @file would work for you (not that I've tried 
>>>>> them with clones, which I'll try out soon) instead of @auto-md.  I don't 
>>>>> think  that @auto-md really gets you anything that they don't, although 
>>>>> you 
>>>>> will need to put *@language md* at  the start of the body of the top 
>>>>> node.
>>>>>
>>>>> On Tuesday, May 23, 2023 at 12:51:48 PM UTC-4 p.os...@datec.at wrote:
>>>>>
>>>>>> An example:
>>>>>>
>>>>>> @auto-md file1.md
>>>>>>     clone-node_1
>>>>>>     clone-node_2
>>>>>>
>>>>>> @auto-md file2.md
>>>>>>     clone-node_1
>>>>>>     clone-node_2
>>>>>>
>>>>>> Changes in a clone causes (don't know exactly when, probably when 
>>>>>> reading the LEO file) that the tree hierarchy is partially destroyed. 
>>>>>> The 
>>>>>> content remains, but ends up in a node that didn't exist before and 
>>>>>> whose 
>>>>>> heading consists of parts of the content.
>>>>>>
>>>>>> I think this could be prevented if @auto-md would only write. Do I 
>>>>>> see that right? And can I force this somehow?
>>>>>>
>>>>>> Best regards
>>>>>> Paul
>>>>>
>>>>>

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