Hey Syed, I get this following error
-bash: /local/biomart/apache/bin: is a directory Thanks and Regards, Sri Krishna On Wed, Dec 15, 2010 at 1:23 PM, Syed Haider <syed.hai...@oicr.on.ca> wrote: > Hi Sri, > > please write what exactly is the ERROR, that would definitely help us. > > Syed > > On 15/12/2010 12:13, Sri Krishna Suresh Kumar wrote: >> >> Hi Leandro and Syed, >> >> Thanks a lot for the quick replies. My perl version is 5.8.8. I have >> also attached the registryURLPointer file. >> >> The --clean option did the trick. Got this message in the end >> "Compiling templates for visible datasets". >> >> Thanks a lot again. >> >> Could you kindly help me with the next step. >> >> In order to start and stop the mart view, the help document says I have to >> type >> >> /my/chosen/Apache/binary -d $PWD -f $PWD/conf/httpd.conf >> >> So I try and type >> >> /local/biomart/apache/bin -d $pwd -f $pwd/conf/httpd.conf >> >> And I get an error message. I know I am doing something wrong here. >> Could you tell me how to correct the mistake and start the mart view >> correctly? >> >> Thanks and Regards, >> Sri Krishna >> On Wed, Dec 15, 2010 at 12:53 AM, Syed Haider<syed.hai...@oicr.on.ca> >> wrote: >>> >>> Hi Sri, >>> >>> have you tried --clean option while you do perl bin/configure ? >>> >>> >>> Syed >>> >>> On 14/12/2010 15:32, Sri Krishna Suresh Kumar wrote: >>>> >>>> Hello, >>>> >>>> I have been trying to install Biomart in my work system. >>>> >>>> I was able to install pre-requisites for biomart-perl using CPAN and >>>> also completed the installation of Apache (2.2.17) and >>>> mod-perl(2.0.4). >>>> >>>> I have also installed the Biomart-perl api (step 1.4.3.1) and I >>>> recieved the message "Looks good... You are done". >>>> >>>> After this step, when I try to configure the MartView, after chaging >>>> the setting.conf file and executing the command perl "bin/configure.pl >>>> -r conf/registryURLPointer.xml" with the answer n to the subsequent >>>> question, I did not get the message "Compiling templates for visible >>>> datasets". Instead It stops prematurely with out any major error >>>> outputs. However I see a warning message of use of uninitialised >>>> variable in a CPAN module. I am attaching the file with the command >>>> issued and the subsequent output received. >>>> >>>> Could you let me know if I am doing anything wrong? Or if this is >>>> normal? >>>> >>>> Thanks and Regards, >>>> Sri Krishna Suresh Kumar >>> >
