Dear Murat and Antonio,
Thanks for your fast response. Of course Murat here I attach the
corresponding files (they derived from Avizo not from Amira)
Antonio yes I tried to use the Arothron function read.amira.set () but the
following error appeared: argument "nland" is missing, with no default.
Here I attach three files one is Landmarks_LLM1_landmarksAscii (landmarks
from a human lower molar) and one B-spline in Avizo binary (*.am) format
and the same file in Avizo ascii (*.am) format
(zan0084_manleft_mirrored_01_curve_LM1.am and
zan0084_manleft_mirrored_01_curveascii_LM1.am)
Thanks for your help
All best,
El lun., 15 de abr. de 2019 8:15 a. m., Murat Maga <m...@uw.edu> escribió:
> Dear Antonio and Miguel,
>
>
>
> Would it be possible to share those files with me as well? I would like to
> implement a way to import Amira landmark files into our SlicerMorph
> package, but we don’t have any to play with.
>
>
>
> Best,
>
> M
>
>
>
>
>
> *From:* Antonio Profico <antonio.prof...@uniroma1.it>
> *Sent:* Sunday, April 14, 2019 4:35 PM
> *To:* Miguel Eduardo Delgado Burbano <mdelgadoburb...@gmail.com>
> *Cc:* MORPHMET <morphmet@morphometrics.org>;
> morphmet-requ...@morphometrics.org
> *Subject:* Re: [MORPHMET] Script to read Avizo landmarks and B-splines
>
>
>
> Hi Miguel,
>
>
>
> please send me the two files from Avizo (.ladmarkAscii) and B-splines
> (.am).
>
> Are you sure that read.amira.set() doesn't work with the .landmarkAscii
> files from Avizo?
>
>
>
> I'll add these two functions in Arothron and before to submit the new
> release to the CRAN I'll send them to you.
>
>
>
> Best,
>
>
> Antonio
>
>
>
> Il giorno lun 15 apr 2019 alle ore 01:26 Miguel Eduardo Delgado Burbano <
> mdelgadoburb...@gmail.com> ha scritto:
>
> Dear All,
>
>
>
> I'm using landmarks (.ladmarkAscii) and B-splines (.am) derived from Avizo
> (Standard Edition 7.1.0). I have used previously the Arothron and Nat
> packages to load landmarks derived from Amira into the R console. Now
> using the Avizo files such packages do not seem to work. Somebody has a
> script to read Avizo files in R or know a way to succesfully load such
> files into the R console? Thanks for any suggestion
>
>
>
> All best,
>
>
>
> Miguel
>
> --
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>
>
>
> --
>
> ______________________________________
>
> Antonio Profico
> PhD
> Department of Environmental Biology – Dipartimento di Biologia Ambientale
> SAPIENZA Università di Roma
>
> MicroWeaR mailing list: https://groups.google.com/forum/#!forum/microwear
>
> Subscription: https://groups.google.com/forum/#!forum/microwear/join
>
>
>
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> <https://groups.google.com/forum/#!forum/microwear>
>
> Subscription: https://groups.google.com/forum/#!forum/arothron/join
>
>
> Lab. 06 4991 2690
> Mob. 3293440766
>
> --
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# Avizo 3D ASCII 2.0
define Markers 11
Parameters {
Color "1.0.9",
NumSets 1,
ContentType "LandmarkSet"
}
Markers { float[3] Coordinates } @1
# Data section follows
@1
1.069824981689453e+002 3.230857086181641e+001 7.741726684570313e+001
1.067253570556641e+002 3.117101860046387e+001 7.906603240966797e+001
1.071337509155273e+002 3.062068939208984e+001 8.174322509765625e+001
1.044278793334961e+002 3.029200363159180e+001 8.385526275634766e+001
1.035018234252930e+002 3.330528259277344e+001 8.359550476074219e+001
1.009194259643555e+002 3.421195983886719e+001 8.097939300537109e+001
1.022753219604492e+002 3.590150451660156e+001 7.821498870849609e+001
1.029237899780273e+002 3.457044982910156e+001 7.538016510009766e+001
1.053571166992188e+002 3.398883819580078e+001 7.497612762451172e+001
1.059745407104492e+002 3.266828918457031e+001 7.570597839355469e+001
1.031460418701172e+002 3.211197662353516e+001 7.892837524414063e+001
# Avizo 3D ASCII 2.0
define Lines 101
nVertices 100
Parameters {
ContentType "HxLineSet"
}
Lines { int LineIdx } @1
Vertices { float[3] Coordinates } @2
# Data section follows
@1
0
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3
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-1
@2
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# Avizo 3D ASCII 2.0
define Points 20
define Degree 1
Parameters {
ContentType "BSpline"
}
Points { float[3] Coordinates } @1
Degree { int DegreeValue } @2
# Data section follows
@1
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@2
3
