Hello everyone,
I'm experiencing the following 'issue' with bibauthorid. (I'm using the
latest master branch and the demo site with only the demo records).
# sudo -u apache /opt/invenio/bin/bibauthorid -u admin --disambiguate
--from-scratch
Bibauthorid Task Submission
===========================
Username: admin
2015-02-06 11:04:56 --> Task #15 submitted.
[root@droopy invenio]# sudo -u apache /opt/invenio/bin/bibauthorid 15
2015-02-06 11:05:02 --> Task #15 started.
Process Process-185:
Traceback (most recent call last):
File "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in
_bootstrap
Process Process-186:
Traceback (most recent call last):
File "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in
_bootstrap
self.run()
self.run()
File "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run
File "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run
self._target(*self._args, **self._kwargs)
self._target(*self._args, **self._kwargs)
File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_wedge.py", line
70, in wedge
File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_wedge.py", line
70, in wedge
matr = ProbabilityMatrix(cluster_set.last_name)
matr = ProbabilityMatrix(cluster_set.last_name)
AttributeError: 'function' object has no attribute 'last_name'
AttributeError: 'function' object has no attribute 'last_name'
Process Process-187:
[...]
(lots of similar errors)
[...]
Process Process-367:
Traceback (most recent call last):
File "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in
_bootstrap
self.run()
File "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run
self._target(*self._args, **self._kwargs)
File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_wedge.py", line
70, in wedge
matr = ProbabilityMatrix(cluster_set.last_name)
AttributeError: 'function' object has no attribute 'last_name'
Process Process-368:
Traceback (most recent call last):
File "/usr/lib64/python2.7/multiprocessing/process.py", line 258, in
_bootstrap
self.run()
File "/usr/lib64/python2.7/multiprocessing/process.py", line 114, in run
self._target(*self._args, **self._kwargs)
File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_wedge.py", line
70, in wedge
matr = ProbabilityMatrix(cluster_set.last_name)
AttributeError: 'function' object has no attribute 'last_name'
2015-02-06 11:08:15 --> Task #15 finished. [RUNNING]
2015-02-06 11:08:15 --> Unexpected error occurred: local variable
'tortoise_db_name' referenced before assignment.
2015-02-06 11:08:15 --> Unexpected error occurred: local variable
'tortoise_db_name' referenced before assignment.
2015-02-06 11:08:15 --> Traceback is:
2015-02-06 11:08:15 --> Traceback is:
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibtask.py", line 610, in
task_init
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibtask.py", line 610, in
task_init
2015-02-06 11:08:15 --> ret = _task_run(task_run_fnc)
2015-02-06 11:08:15 --> ret = _task_run(task_run_fnc)
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibtask.py", line 1173, in
_task_run
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibtask.py", line 1173, in
_task_run
2015-02-06 11:08:15 --> if callable(task_run_fnc) and task_run_fnc():
2015-02-06 11:08:15 --> if callable(task_run_fnc) and task_run_fnc():
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_daemon.py", line
157, in _ta sk_run_core
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_daemon.py", line
157, in _ta sk_run_core
2015-02-06 11:08:15 -->
run_tortoise(bool(bibtask.task_get_option("from_scratch")))
2015-02-06 11:08:15 -->
run_tortoise(bool(bibtask.task_get_option("from_scratch")))
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_daemon.py", line
319, in run _tortoise
2015-02-06 11:08:15 --> File
"/usr/lib64/python2.7/site-packages/invenio/bibauthorid_daemon.py", line
319, in run _tortoise
2015-02-06 11:08:15 --> insert_user_log(tortoise_db_name, '-1', '',
'', '', timestamp=start_time)
2015-02-06 11:08:15 --> insert_user_log(tortoise_db_name, '-1', '',
'', '', timestamp=start_time)
2015-02-06 11:08:15 --> Exiting.
2015-02-06 11:08:15 --> Exiting.
- One issue seems to be: AttributeError: 'function' object has no
attribute 'last_name' . Seems important, but this doesn't break things.
- The Unexpected error occurred: local variable 'tortoise_db_name'
referenced before assignment does break the process and happens only
with '--from-scratch' is used. Looking at bibauthorid_daemon.py it seems
that moving tortoise_db_name and start_time definitions outside the else
block solves the problem.
Having said that, I should also mention that I cannot seem to get any
meaningful results in the aid% tables, probably(?) in relation to the
first issue.
Can you verify my findings in your local installations?
Best regards,
Theodoros
ps. apologies if there is a fix already available and waiting to be
merged to master :)
