Hi, On Tue, Mar 06, 2012 at 04:40:27AM +0100, Greg Landrum wrote: > On Sun, Mar 4, 2012 at 8:59 PM, Michael Banck <mba...@debian.org> wrote: > > On Sun, Jan 15, 2012 at 10:12:03AM +0100, Greg Landrum wrote: > > 1. Running the test-suite in-place is either impossible or really tricky > > as the cmake puts the compiled objects below obj-* and leaves the python > > code (including the .pyc byte-code files) in the main source tree. I > > had to give up and just copy over rdkit recursively into obj-*. > > I'm not sure what you mean here. If you're doing an out-of-source > build (which it sounds like you are), then you need to do a "make > install" to get the built .so files copied into the $RDBASE/rdkit > directory so that the python tests can pass.
The general way of building Debian packages is: 1. Configure (run cmake in this case) 2. Make 3. Run testsuite, if there is any 4. Run Make install, overriding the target directory to a staging directory under debian/ 5. Assemble package from the contents of the staging directory plus additional metadata. This makes it impossible or at least hackish and awkward to run the testsuite after install. I will have to look how other cmake projects do this with compiled python modules. Note that I set RDK_INSTALL_INTREE=OFF. Maybe it would indeed be easiest to do an in-tree build, but in my opinion, it should not matter whether one builds in-tree or not. > Up to this point I was fine, and can fix the problem, but this one: > > rdkit-201112/rdkit/__init__.py > is in svn, so it shouldn't be showing up as something that didn't > originally exist. Right, that was probably some leftover from some unsuccessful experiments I did with trying to add some stuff to __init__.py so it finds the corresponding .so files. So nevermind this. Michael ------------------------------------------------------------------------------ Virtualization & Cloud Management Using Capacity Planning Cloud computing makes use of virtualization - but cloud computing also focuses on allowing computing to be delivered as a service. http://www.accelacomm.com/jaw/sfnl/114/51521223/ _______________________________________________ Rdkit-devel mailing list Rdkit-devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-devel
