Curt,
If you change lines 32 and 33
in <Anaconda>/lib/site-packages\rdkit\RDConfig.py
to:
condaDir += ['Library', 'share', 'RDKit']
_share = os.path.join(*condaDir)
I think it should work.
Sorry for the inconvenience here; we will fix it before running the next
conda builds.
-greg
On Wed, Jan 4, 2017 at 1:44 AM, Curt Fischer <curt.r.fisc...@gmail.com>
wrote:
>
> Thanks for writing in Matt!
>
> Do you or any other readers think there is any chance that a small manual
> fix to RDConfig.py could fix the problem? I have very little experience
> with building anything from source and would like to use the newest version
> of rdkit if possible. Would it be as simple as adding the *.sep* to
> *<Anaconda>/lib/site-packages\rdkit\RDConfig.py* ?
> Curt
>
> On Wed, Dec 21, 2016 at 2:22 AM, Matthew Swain <m.sw...@me.com> wrote:
>
>> I've also encountered this problem with the 2016.09.2 windows packages on
>> the rdkit conda channel. It looks like somehow the RDConfig patch in the
>> conda recipe hasn't been applied properly in the published packages.
>>
>> The original lines in the rdkit are:
>>
>> condaDir += ['share', 'RDKit']
>> _share = os.path.join(*condaDir)
>>
>> The conda recipe has a Windows-specific patch to change this to:
>>
>> condaDir += ['Library','share','RDKit']
>> _share = os.path.sep.join(condaDir)
>>
>> Which looks fine (although the second line doesn't really need
>> changing?). But in the published packages it is:
>>
>> condaDir += ['share', 'RDKit', 'RDKit']
>> _share = os.path.join(condaDir)
>>
>> This causes the AttributeError because it incorrectly passes a list to
>> os.path.join, with no asterisk for unpacking the list into *args. The first
>> line is also incorrect.
>>
>> I built the package myself from the recipe, and didn't see this issue.
>>
>> Matt
>>
>> On Dec 09, 2016, at 05:05 PM, Curt Fischer <curt.r.fisc...@gmail.com>
>> wrote:
>>
>> I'm not sure of the source of the problem with the conda 2016.09 release
>> on my Windows box, but I was able to revert to a 2016.03 release with a
>> *conda
>> install -c rmg rdkit=2016.03**
>>
>> conda couldn't seem to solve the specifications automagically, but after
>> I uninstalled boost and did the above command, it identified the proper
>> boost to install along with the 2016.03 rdkit.
>>
>> I now have a functioning rdkit again, but would still be interested in
>> hearing from anyone that experiences a similar problem.
>>
>> On Thu, Dec 8, 2016 at 9:27 AM, Curt Fischer <curt.r.fisc...@gmail.com>
>> wrote:
>>
>>> To update rdkit to the September release, I recently did a
>>>
>>> *conda install -f --channel https://conda.anaconda.org/rdkit
>>> <https://conda.anaconda.org/rdkit> rdkit*
>>>
>>> on my Windows box, and everything seemed to update fine.
>>>
>>> However now, when I try from rdkit import Chem, I get the disturbing
>>> error message below.
>>>
>>> Is this a sign that my particular installation got borked somehow, and I
>>> maybe I should reinstall everything again? Or is this perchance a known
>>> issue with the 2016.09 release? If the latter, how do I roll back to the
>>> old release using conda? I tried a *conda install --channel
>>> https://conda.anaconda.org/rdkit <https://conda.anaconda.org/rdkit>
>>> rdkit=2016.03.4 *but that didn't seem to do it.
>>>
>>> Thanks all for any help!
>>>
>>> Curt
>>>
>>> ---------------------------------------------------------------------------AttributeError
>>> Traceback (most recent call
>>> last)<ipython-input-5-17d7acb427ab> in <module>()----> 1 from rdkit import
>>> Chem
>>> C:\Anaconda2\lib\site-packages\rdkit\Chem\__init__.py in <module>() 17
>>> """ 18 from rdkit import rdBase---> 19 from rdkit import RDConfig
>>> 20 21 from rdkit import DataStructs
>>> C:\Anaconda2\lib\site-packages\rdkit\RDConfig.py in <module>() 31
>>> condaDir[0] = os.path.sep 32 condaDir += ['share', 'RDKit',
>>> 'RDKit']---> 33 _share = os.path.join(condaDir) 34 RDDataDir =
>>> os.path.join(_share, 'Data') 35 RDDocsDir = os.path.join(_share,
>>> 'Docs')
>>> C:\Anaconda2\lib\ntpath.pyc in join(path, *paths) 63 def join(path,
>>> *paths): 64 """Join two or more pathname components, inserting "\\"
>>> as needed."""---> 65 result_drive, result_path = splitdrive(path)
>>> 66 for p in paths: 67 p_drive, p_path = splitdrive(p)
>>> C:\Anaconda2\lib\ntpath.pyc in splitdrive(p) 114 """ 115 if
>>> len(p) > 1:--> 116 normp = p.replace(altsep, sep) 117 if
>>> (normp[0:2] == sep*2) and (normp[2:3] != sep): 118 # is a
>>> UNC path:
>>> AttributeError: 'list' object has no attribute 'replace'
>>>
>>>
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>
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