Le 07/03/2017 à 19:00, Markus Metz a écrit :
> Does anybody have a suggestion how I might change the molecular 
> representation?

Dear Markus,

If you want a clever image, you could use pymol in XML-RPC mode 
(https://iwatobipen.wordpress.com/2013/09/16/rdkit-and-pymol/),
or draw an image with thicker bonds 
(http://asteeves.github.io/blog/2015/01/12/optimizing-in-rdkit/, but 
check also http://asteeves.github.io/blog/2015/01/14/editing-in-rdkit/ 
especially the second point for drawing parameters).

I'm not 100% sure it will be perfect for your needs, especially if you 
have large molecules (or a lot of them), but at least you have entry 
pointers to dig with.

Best,

Stéphane

-- 
Lecturer, UFIP, UMR 6286 CNRS, Team Protein Design In Silico
UFR Sciences et Techniques, 2, rue de la Houssinière, Bât. 25, 44322 Nantes 
cedex 03, France
Tél : +33 251 125 636 / Fax : +33 251 125 632
http://www.ufip.univ-nantes.fr/ - http://www.steletch.org


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