Re: [Dspace-tech] How to Add more than 3 Workflow Steps?

2013-04-08 Thread LifeH2O
Anyone there?



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[Dspace-tech] Integrate thesaurus such as MeSH into Dspace

2013-04-08 Thread rémi Asare
Hello lovely community,

Is there any possibility to integrate the medical subject heading MeSH into
Dspace.?

Thanks in advance

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Re: [Dspace-tech] Indexing one collection

2013-04-08 Thread helix84
Hi Mark,

AFAIK, this can't be done out-of-the-box, neither for Lucene nor for
Solr (you didn't specify which one).

It can be done by writing a curation task and perhaps even invoking it
as a workflow step.

But perhaps there's another way where this is not necessary - what is
your overall workflow, which submission/import method are you using
and why do you think you need to index one collection?


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


On Sat, Apr 6, 2013 at 6:34 PM, Mark Ehle marke...@gmail.com wrote:
 Hello - Is there a way to index just one collection after it is submitted?

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Re: [Dspace-tech] Maven: Cannot find parent: org.sonatype.oss:oss-parent for project

2013-04-08 Thread helix84
 Specified destination directory cannot be created: 
 /opt/tomcat/.m2/repository/org/sonatype/oss/oss-parent/7

This is the problem. Are you running the mvn package command as a
user who has write access to /opt/tomcat/ ?


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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On Sun, Apr 7, 2013 at 3:31 AM, Federico Matarrita
feder...@usematics.com wrote:

 Hello I'm trying to install Dspace, I have install all the prerequisites and
 when I'm going to make the maven part I get an error that maven can't find
 the parent project in any repository.
 Should I add (and if so, how?) a new repository?

 Thanks in advance for any help.
 Federico.

 :/srv/dspace-src/dspace-3.1-release$ sudo -u dspace mvn package


 [INFO] Scanning for projects...
 Downloading:
 http://oss.sonatype.org/content/repositories/releases//org/sonatype/oss/oss-parent/7/oss-parent-7.pom
 [INFO] Unable to find resource 'org.sonatype.oss:oss-parent:pom:7' in
 repository sonatype-releases
 (http://oss.sonatype.org/content/repositories/releases/)
 Downloading:
 http://repo1.maven.org/maven2/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
 [WARNING] Unable to get resource 'org.sonatype.oss:oss-parent:pom:7' from
 repository central (http://repo1.maven.org/maven2): Specified destination
 directory cannot be created:
 /opt/tomcat/.m2/repository/org/sonatype/oss/oss-parent/7
 [INFO]
 
 [ERROR] FATAL ERROR
 [INFO]
 
 [INFO] Error building POM (may not be this project's POM).


 Project ID: org.dspace:dspace-parent:pom:3.1

 Reason: Cannot find parent: org.sonatype.oss:oss-parent for project:
 org.dspace:dspace-parent:pom:3.1 for project
 org.dspace:dspace-parent:pom:3.1


 [INFO]
 
 [INFO] Trace
 org.apache.maven.reactor.MavenExecutionException: Cannot find parent:
 org.sonatype.oss:oss-parent for project: org.dspace:dspace-parent:pom:3.1
 for project org.dspace:dspace-parent:pom:3.1
 at org.apache.maven.DefaultMaven.getProjects(DefaultMaven.java:404)
 at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:272)
 at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
 at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
 at
 org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
 at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 at
 sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 at
 sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
 at java.lang.reflect.Method.invoke(Method.java:597)
 at
 org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
 at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
 at
 org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
 at org.codehaus.classworlds.Launcher.main(Launcher.java:375)
 Caused by: org.apache.maven.project.ProjectBuildingException: Cannot find
 parent: org.sonatype.oss:oss-parent for project:
 org.dspace:dspace-parent:pom:3.1 for project
 org.dspace:dspace-parent:pom:3.1
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.assembleLineage(DefaultMavenProjectBuilder.java:1396)
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.buildInternal(DefaultMavenProjectBuilder.java:823)
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.buildFromSourceFileInternal(DefaultMavenProjectBuilder.java:508)
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.build(DefaultMavenProjectBuilder.java:200)
 at org.apache.maven.DefaultMaven.getProject(DefaultMaven.java:604)
 at
 org.apache.maven.DefaultMaven.collectProjects(DefaultMaven.java:487)
 at org.apache.maven.DefaultMaven.getProjects(DefaultMaven.java:391)
 ... 12 more
 Caused by: org.apache.maven.project.ProjectBuildingException: POM
 'org.sonatype.oss:oss-parent' not found in repository: Unable to download
 the artifact from any repository

   org.sonatype.oss:oss-parent:pom:7

 from the specified remote repositories:
   central (http://repo1.maven.org/maven2),
   sonatype-releases (http://oss.sonatype.org/content/repositories/releases/)

  for project org.sonatype.oss:oss-parent
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.findModelFromRepository(DefaultMavenProjectBuilder.java:605)
 at
 org.apache.maven.project.DefaultMavenProjectBuilder.assembleLineage(DefaultMavenProjectBuilder.java:1392)
 ... 18 more
 Caused by: org.apache.maven.artifact.resolver.ArtifactNotFoundException:
 Unable to download the artifact from any repository

   org.sonatype.oss:oss-parent:pom:7

 from the specified remote 

Re: [Dspace-tech] Indexing one collection

2013-04-08 Thread Mark Ehle
I am importing newspaper scans, and there are a bunch. I would like each
submission to be available after I import it. Am I thinking about this
wrong? What I have been doing up to this point is import about 100 days
worth, then run index-update and update-discovery-index. It takes a while
for them to run.


On Mon, Apr 8, 2013 at 8:43 AM, helix84 heli...@centrum.sk wrote:

 Hi Mark,

 AFAIK, this can't be done out-of-the-box, neither for Lucene nor for
 Solr (you didn't specify which one).

 It can be done by writing a curation task and perhaps even invoking it
 as a workflow step.

 But perhaps there's another way where this is not necessary - what is
 your overall workflow, which submission/import method are you using
 and why do you think you need to index one collection?


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


 On Sat, Apr 6, 2013 at 6:34 PM, Mark Ehle marke...@gmail.com wrote:
  Hello - Is there a way to index just one collection after it is
 submitted?
 
 
 --
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  Reduce network management and security costs.Learn how to hire
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Re: [Dspace-tech] item-vew.xsl

2013-04-08 Thread helix84
Is this what you need?


diff --git
a/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl
b/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl
index 36fe116..d6c3641 100644
---
a/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl
+++
b/dspace-xmlui/src/main/webapp/themes/Mirage/lib/xsl/aspect/artifactbrowser/item-view.xsl
@@ -38,10 +38,6 @@
 xsl:output indent=yes/

 xsl:template name=itemSummaryView-DIM
-!-- Generate the info about the item from the metadata section --
-xsl:apply-templates
select=./mets:dmdSec/mets:mdWrap[@OTHERMDTYPE='DIM']/mets:xmlData/dim:dim
-mode=itemSummaryView-DIM/
-
 xsl:copy-of select=$SFXLink /
 !-- Generate the bitstream information from the file section --
 xsl:choose
@@ -73,6 +69,10 @@
 /xsl:otherwise
 /xsl:choose

+!-- Generate the info about the item from the metadata section --
+xsl:apply-templates
select=./mets:dmdSec/mets:mdWrap[@OTHERMDTYPE='DIM']/mets:xmlData/dim:dim
+mode=itemSummaryView-DIM/
+
 !-- Generate the Creative Commons license information from the
file section (DSpace deposit license hidden by default)--
 xsl:apply-templates
select=./mets:fileSec/mets:fileGrp[@USE='CC-LICENSE']/
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Re: [Dspace-tech] Indexing one collection

2013-04-08 Thread helix84
Hi Mark,

again, what method of import are you using? There are several. I think all
of them update the Lucene index. IIRC some don't update the Solr index
(obviously, they all should). In order to verify that, you can look at the
dspace log and see a bunch of messages like this for Lucene:

org.dspace.search.DSIndexer @ Writing Item: 123456789/3166 to Index
org.dspace.search.DSIndexer @ Wrote Item: 123456789/3166 to Index

and like this for Discovery:

org.dspace.discovery.SolrServiceImpl @ Wrote Item: 123456789/3166 to Index

Anyway, I'm fairly sure you can't cut down on the time it takes to run
update-discovery-index,
because it only indexes changed items. I think this is also the case
with index-update,
but I'm not sure.


Regards,
~~helix84

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Re: [Dspace-tech] oai

2013-04-08 Thread helix84
On Thu, Apr 4, 2013 at 8:34 PM, Jose Blanco blan...@umich.edu wrote:
 ./dspace oai -c import

 Now I'm seeing the records.

 Question.  It seems like this should be done when the system is down, or we 
 could have performance problems and even an interruption to the indexing.  I 
 have 75,000 items in the repository.  I think to run this command could take 
 many hours, does any one have an idea?

 Because I think that setting up oai to use solar might not be reasonable.  It 
 takes too long to get all the items loaded, I tried the db load, but now the 
 GetRecord is not working.   I can see the list of identifiers, but get record 
 says:  the given id does not exists.


Hi Jose,

oai import -c clears the Solr oai core and then starts a full import
oai import starts an incremental import (only new/changed items
since last import)

So you needed to run the full import once to clean some previous mess,
but now you only need to run the incremental import.

 I have just prepared oai in my dev area using database storage and and I'm 
 seeing a lot of null ids, like this:

I really recommend against DB storage for performance reasons. Yes,
the full import is slow, but you're supposed to do it only once (or
after a schema change). Whereas with DB storage, all reads are slower
by orders of magnitude compared to Solr reads.

I can't help you with the null ids because I practically haven't used
DB storage. João has been MIA for some time now. Switch to Solr
storage and try again.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] Bots and cpu

2013-04-08 Thread Ene Rammer Nielsen
Hi,
Thanks for the responses.

We discovered our problems by looking through apache logs. Unfortunately we are 
not using the xmlui, but jsp ui, so I guess we can't use sitemap.xmap. We are 
looking into setting up some restrictions in our robots.txt to see if that will 
help.

We also talked about restricting bots bandwidth by using mod-bw. Does anybody 
have any experience with that?
Regards,
Ene Rammer Nielsen, Roskilde University Library.

-Oprindelig meddelelse-
Fra: Andrea Schweer [mailto:schw...@waikato.ac.nz] 
Sendt: 8. april 2013 07:35
Til: dspace-tech@lists.sourceforge.net
Emne: Re: [Dspace-tech] Bots and cpu

Hi,

On 07/04/13 02:14, Sims, Richard B wrote:
 our site's Google Search Appliance was intensely indexing the content served 
 by this system. When that indexing completed, the load average went back to 
 nil. Looking back in our system monitoring graphs, I saw that this load spike 
 occurred every Tuesday morning - when the GSA was doing a full indexing run. 

When we experienced some problems with GSA in one of my repositories, we 
managed to improve the situation quite significantly by adding gsa-crawler to 
the list of known bots in the main XMLUI sitemap.xmap.
See here for some background:
http://www.mail-archive.com/dspace-tech@lists.sourceforge.net/msg19537.html

We're also disallowing Discovery and the browse indexes for gsa-crawler; it 
gets all relevant pages via the sitemap anyway.

Sorry about the short e-mail, I'm about to head home. I can give some more 
details about the sitemap.xmap changes if anyone is interested.

cheers,
Andrea

--
Dr Andrea Schweer
IRR Technical Specialist, ITS Information Systems The University of Waikato, 
Hamilton, New Zealand


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Re: [Dspace-tech] oai

2013-04-08 Thread helix84
Regarding your Solr problems, it seems you still didn't change
solr.url to localhost.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] blocking Recent submssions

2013-04-08 Thread helix84
Hi Sisay,

here's the code:

xsl:template name=disable_collection_recent-submissions
match=dri:div[@id='aspect.artifactbrowser.CollectionRecentSubmissions.div.collection-recent-submission']
  xsl:if test=//dri:metadata[@element='request' and
@qualifier='URI']/text() != 'handle/123456789/123'
xsl:apply-templates /
  /xsl:if/xsl:template




Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette
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Re: [Dspace-tech] Bots and cpu

2013-04-08 Thread helix84
On Mon, Apr 8, 2013 at 3:13 PM, Ene Rammer Nielsen ram...@ruc.dk wrote:
 We also talked about restricting bots bandwidth by using mod-bw. Does anybody 
 have any experience with that?

I don't, but another option you might consider is shaping using
iptables (if you're running Linux).

The following article should give you an idea, but a google search
will tell you more.
http://www.debian-administration.org/articles/187


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] (no subject)

2013-04-08 Thread helix84
On Fri, Apr 5, 2013 at 8:33 AM, Meron Mesfin m.mero...@yahoo.com wrote:
 hello there as you told me last time to change the
 DSPACEDIR=`cd $BINDIR/.. ; pwd`
 with your path to dspace, e.g.
 DSPACEDIR=/dspace
 what do you mean by that DSPACEDIR=/dspace can you tell me with a little
 brief and also shall i rebuild it after the change has been done
 Thanks a lot
 best regards!

What I meant was to use literally your path to DSpace instead of a
relative path. So if your DSpace is installed in /dspace, use
DSPACEDIR=/dspace. If your DSpace is in /mnt/dspace/, use
DSPACEDIR=/mnt/dspace.


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

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Re: [Dspace-tech] java.util.NoSuchElementException: Timeout waiting for idle object

2013-04-08 Thread helix84
Does this help?

http://dspace.2283337.n4.nabble.com/Recurring-Error-org-dspace-app-oai-PluginCrosswalk-td4662351.html#a4662359


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
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Re: [Dspace-tech] Bots and cpu

2013-04-08 Thread George Stanley Kozak
Hi, Ene:

We are using the JSPUI at Cornell University, and we are using sitemaps, so you 
should be able to set them up to help in your bot problem.

I run path to dspace/bin/dspace generate-sitemaps every Saturday.  The 
sitemaps end up in path to dspace/sitemaps and as I recall I had to register 
with Google.  
I think it's all in the Install guide.

George Kozak
Digital Library Specialist
Cornell University Library Information Technologies (CUL-IT)
218 Olin Library
Cornell University
Ithaca, NY 14853
607-255-8924

-Original Message-
From: Ene Rammer Nielsen [mailto:ram...@ruc.dk] 
Sent: Monday, April 08, 2013 9:13 AM
To: Andrea Schweer; dspace-tech@lists.sourceforge.net; Sims, Richard B; Hilton 
Gibson
Subject: Re: [Dspace-tech] Bots and cpu

Hi,
Thanks for the responses.

We discovered our problems by looking through apache logs. Unfortunately we are 
not using the xmlui, but jsp ui, so I guess we can't use sitemap.xmap. We are 
looking into setting up some restrictions in our robots.txt to see if that will 
help.

We also talked about restricting bots bandwidth by using mod-bw. Does anybody 
have any experience with that?
Regards,
Ene Rammer Nielsen, Roskilde University Library.

-Oprindelig meddelelse-
Fra: Andrea Schweer [mailto:schw...@waikato.ac.nz]
Sendt: 8. april 2013 07:35
Til: dspace-tech@lists.sourceforge.net
Emne: Re: [Dspace-tech] Bots and cpu

Hi,

On 07/04/13 02:14, Sims, Richard B wrote:
 our site's Google Search Appliance was intensely indexing the content served 
 by this system. When that indexing completed, the load average went back to 
 nil. Looking back in our system monitoring graphs, I saw that this load spike 
 occurred every Tuesday morning - when the GSA was doing a full indexing run. 

When we experienced some problems with GSA in one of my repositories, we 
managed to improve the situation quite significantly by adding gsa-crawler to 
the list of known bots in the main XMLUI sitemap.xmap.
See here for some background:
http://www.mail-archive.com/dspace-tech@lists.sourceforge.net/msg19537.html

We're also disallowing Discovery and the browse indexes for gsa-crawler; it 
gets all relevant pages via the sitemap anyway.

Sorry about the short e-mail, I'm about to head home. I can give some more 
details about the sitemap.xmap changes if anyone is interested.

cheers,
Andrea

--
Dr Andrea Schweer
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[Dspace-tech] DSpace scalability (tens of hundreds TBs)

2013-04-08 Thread Vlastimil Krejcir
Hello all,

I have already posted this to dspace-general, however, without a 
great effect. I hope it will be better here :-).

I have been recently asked the question on DSpace scalability - assume the 
project:

16 millions of items (bistreams size about 230 TB) increasing by 3
millions items (86 TB) per year

Is DSpace able to handle this? My answer was I don't know. Is anyone
working with such big loads of data? What is your opinion?

Regards,

Vlastik


Vlastimil Krejčíř
Library and Information Centre, Institute of Computer Science
Masaryk University, Brno, Czech Republic
Email: krejcir (at) ics (dot) muni (dot) cz
Phone: +420 549 49 3872
ICQ: 163963217
Jabber: kre...@jabber.org



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Re: [Dspace-tech] DSpace scalability (tens of hundreds TBs)

2013-04-08 Thread helix84
Hi Vlastik,

I don't know the answer, either, but I tried to gather some links on that topic:

http://www.imaging.org/IST/store/epub.cfm?abstrid=38878
http://www.dspace.org/index.php?option=com_contentItemid=11catid=65id=377view=article
http://archive.nlm.nih.gov/pubs/ceb2008/2008016.pdf
http://dspace.2283337.n4.nabble.com/Dspace-tech-Scalability-issues-report-DSpace-Cambridge-td3287701.html

If you don't receive a reply here, try asking Tim or Mark Diggory
directly - they're most likely to know users with large number of
items. Some recent threads (which I can't find right now) mentioned
only large bitstreams (which doesn't seem to be your case).


Regards,
~~helix84

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Re: [Dspace-tech] oai

2013-04-08 Thread Jose Blanco
helix84,

I have my production instance using solr, and I noticed that if I don't
import items, when an item is requested using GetRecord it grabs it and
puts it in the cache area (var/oai), and this may be OK for us, in other
words don't do the import and just have items build up in the var/oai dir
as our repository is harvested, but I'm still seeing the null in the ids
when I do a ListIdeintifiers.  I think the ids must be cumming from the db
but I can't figure out where in the code and what the sql that does this
is.  You can take a look at:

http://deepblue.lib.umich.edu/dspace-oai/request?verb=ListSets

Any idea?

On Mon, Apr 8, 2013 at 9:13 AM, helix84 heli...@centrum.sk wrote:

 Regarding your Solr problems, it seems you still didn't change
 solr.url to localhost.


 Regards,
 ~~helix84

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Re: [Dspace-tech] Bots and cpu

2013-04-08 Thread Mark H. Wood
Well, one thing I'd do is to complain to the people who run the GSA.
IMHO it shouldn't be hitting any site that hard.  If there isn't a way
to throttle it back...there should be.

We had problems with a runaway GSA and I just firewalled it off until
I'm satisfied that they have it under control.

DSpace can generate sitemaps.  Can the bot in question be taught to
calm down and just use these?

-- 
Mark H. Wood, Lead System Programmer   mw...@iupui.edu
There's an app for that:  your browser


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Re: [Dspace-tech] importing to the db directly

2013-04-08 Thread helix84
On Mon, Apr 8, 2013 at 4:09 PM, Drover, Matt mattdro...@mun.ca wrote:
 Looks easy enough. Do I leave out the id column if I'm just adding? Also, how 
 do I add the metadata info of the bitstream (size, name, etc) as the file 
 resides out side of dspace?

No, you put in a +. This is the best tutorial on the topic:

https://kb.osu.edu/dspace/handle/1811/47279

Here is the official docs:

https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing


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Re: [Dspace-tech] oai

2013-04-08 Thread Jose Blanco
I checked the db and I saw that there are no null handles.  I did not run
import.  Since I noticed that if  do a GetRecord with a valid handle like:

http://deepblue.lib.umich.edu/dspace-oai/request?verb=GetRecordmetadataPrefix=oai_dcidentifier=oai:2027.42:2027.42/991

I get the record, regardless of whether it's in var/oai or not.  Do I need
to run import, to have ListRecords/ListIdentifiers work.  I did a bit of
testing on this on Friday, and in my dev area it took an average of 15
seconds an item to import and I also noticed that performance in my dev
instance was bad during that time.  In my production instance I have 75K
items, can you imagine how long this will take and what the performance
will be like.  But the basic question for now is if I need to run import to
have ListRecords and LetRecords work.

-Jose


On Mon, Apr 8, 2013 at 9:56 AM, helix84 heli...@centrum.sk wrote:

 You probably know this, just to make sure - there should be a handle
 where the null is. E.g.:
 oai:deepblue.lib.umich.edu:123456789/123

 So either you didn't have a handle.prefix configured when you ran the
 import, or something is not right with your handles. Do the nulls show
 up for all items in the repository or just some? You may want to look
 at the handle table to see if any of your items have a null handle.


 Regards,
 ~~helix84

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Re: [Dspace-tech] importing to the db directly

2013-04-08 Thread Drover, Matt
Ok, I've got the item importing fine, but how do I add my bitstream? I'm not 
saving the file in dspace but I need the bitstream details to display in the 
item view page.

Thanks.

-Matt

-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: Monday, April 8, 2013 11:44 AM
To: Drover, Matt
Cc: dspace-tech
Subject: Re: [Dspace-tech] importing to the db directly

On Mon, Apr 8, 2013 at 4:09 PM, Drover, Matt mattdro...@mun.ca wrote:
 Looks easy enough. Do I leave out the id column if I'm just adding? Also, how 
 do I add the metadata info of the bitstream (size, name, etc) as the file 
 resides out side of dspace?

No, you put in a +. This is the best tutorial on the topic:

https://kb.osu.edu/dspace/handle/1811/47279

Here is the official docs:

https://wiki.duraspace.org/display/DSDOC3x/Batch+Metadata+Editing


Regards,
~~helix84

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Re: [Dspace-tech] importing to the db directly

2013-04-08 Thread helix84
Simply include the bitstream URL in a metadata field and then render
that metadata field as a clickable link.


Regards,
~~helix84

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Re: [Dspace-tech] How to Add more than 3 Workflow Steps?

2013-04-08 Thread Tim Donohue
Hello,

DSpace JSPUI only supports up to 3 workflow steps, as you mentioned.

However, if you instead used the DSpace XMLUI, you could enable the new 
Configurable Workflow feature to more easily customize your workflow 
approval process:

https://wiki.duraspace.org/display/DSDOC3x/Configurable+Workflow

The Configurable Workflow feature is only currently available for the 
XMLUI (in DSpace 1.8 or above).

Currently, there is no easy way to add more workflow steps to the DSpace 
JSPUI -- you'd have to customize a large amount of code, and it would 
not be recommended (as it could make future upgrades more difficult).

It might be possible to try and port the Configurable Workflow feature 
over to the JSPUI. I'm not certain how difficult that would be (as 
admittedly, I'm not an expert on Configurable Workflow). But, if you 
went that direction, I'd encourage you to submit your changes back to 
the DSpace codebase -- as we could offer that improvement in a future 
DSpace release.

- Tim


On 4/5/2013 7:33 AM, LifeH2O wrote:
 *Version: DSpace 3.1 (JSPUI)*

 By default DSpace allows 3 workflow steps (I might not have understood it
 correctly). Each perform different operations. How to add 4 or 5 or more
 steps before submission? Let say I want to add 5 people each with
 Accept/Reject/Edit priveleges in a sequence in submission workflow??






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Re: [Dspace-tech] oai

2013-04-08 Thread Jose Blanco
Thanks for all this valuable information.   I have a few more questions.

1.  In the old oai we used to put the dc values associated with a
particular format in crosswalks dir (say we wanted to add a particular dc
value, or remove one from the response).  I think in this version of oai,
if we want to change anything from the out-of-the-box, we go to
crosswalks/oai/metadataFormats and change the xsl, right?

2.  I'm going to try using the solr instance for oai in production, if the
oai setup hiccups or I have to stop it because performance is bad on our
instance, this will not mess-up the solr index used by our instance, right?

3.  Presently when a search/browse is done against solr, items that have
READ access to a particular group will not be exposed, unless the user is a
member of that group.  So I would expect that users of oai would fall under
the Anonymous category and so no items with READ permission set to a group
should be exposed in oai.  This may be a question for Mark Diggory, but
wanted to check if you knew the answer.

Many thanks!
Jose

On Mon, Apr 8, 2013 at 10:53 AM, helix84 heli...@centrum.sk wrote:

 If you're using Solr storage, yes, you need to run the full import
 once. (I'm not sure about DB storage)

 Regarding performance issues - the reason Solr is fast is that it
 tries to use as much memory as you can give it. Therefore any
 performance limitations are most likely caused by little memory. If
 you can, increase the amount of memory you give Tomcat in JAVA_OPTS.

 The good thing about oai import is that it shows you a message after
 each imported 100 of items, so you can watch the progress.


 Regards,
 ~~helix84

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Re: [Dspace-tech] importing to the db directly

2013-04-08 Thread Drover, Matt
But how do I get it to show up in the bitstreasm list ?

-Matt

-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: Monday, April 8, 2013 12:25 PM
To: Drover, Matt
Cc: dspace-tech
Subject: Re: [Dspace-tech] importing to the db directly

Simply include the bitstream URL in a metadata field and then render that 
metadata field as a clickable link.


Regards,
~~helix84

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Re: [Dspace-tech] oai

2013-04-08 Thread Jose Blanco
Great.  Thank you!

On Mon, Apr 8, 2013 at 11:54 AM, helix84 heli...@centrum.sk wrote:

 On Mon, Apr 8, 2013 at 5:33 PM, Jose Blanco blan...@umich.edu wrote:
  1.  In the old oai we used to put the dc values associated with a
 particular
  format in crosswalks dir (say we wanted to add a particular dc value, or
  remove one from the response).  I think in this version of oai, if we
 want
  to change anything from the out-of-the-box, we go to
  crosswalks/oai/metadataFormats and change the xsl, right?

 That's correct. You will also need to run [dspace]/bin/dspace oai
 clean-cache to get rid of the pre-cached OAI responses.

  2.  I'm going to try using the solr instance for oai in production, if
 the
  oai setup hiccups or I have to stop it because performance is bad on our
  instance, this will not mess-up the solr index used by our instance,
 right?

 If you mean your Solr index used by Discovery, then no it will have no
 effect. Discovery uses a Solr core (Solr terminology for index) called
 search. OAI uses its own core called oai.

 If you interrupt oai import -c or oai import, you should be simply
 able to resume where you left of by running oai import.

 Generally speaking, if something goes horribly wrong, either with the
 search or oai core, it is trivial (although time-consuming) to
 recreate them from the DB. The only data you don't want to lose is the
 statistics core (if you're using Solr statistics).

  3.  Presently when a search/browse is done against solr, items that have
  READ access to a particular group will not be exposed, unless the user
 is a
  member of that group.  So I would expect that users of oai would fall
 under
  the Anonymous category and so no items with READ permission set to a
 group
  should be exposed in oai.  This may be a question for Mark Diggory, but
  wanted to check if you knew the answer.

 No, I don't think OAI 2.0 respects that and I'm not sure the old OAI
 did, either. Moreover, it doesn't respect items marked as private
 (discoverable=false) because private items and the new OAI were 3.0
 features developed in parallel, so they don't work together just yet.

 But it is relatively simple to configure a filter in XOAI
 configuration which will filter out items based on any metadata value.
 Read more here:

 https://wiki.duraspace.org/display/DSDOC3x/OAI+2.0+Server


 Regards,
 ~~helix84

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Re: [Dspace-tech] java.util.NoSuchElementException: Timeout waiting for idle object

2013-04-08 Thread helix84
You should try to raise the number of allowed concurrent transactions
in both Postgres configuration (max_connections) and DSpace
configuration (db.maxconnections).

If you connect to your database and run SELECT * from
pg_stat_activity; and you see many items as IDLE in transaction,
it means all your connections are used up. In particular, this was
often caused by the old oai module in DSpace 1.8 and older.

You can find more about this error in the archive of this mailing list
and in Jira. There isn't really any reliable solution besides raising
the number of connections and occasionally restarting Tomcat or
upgrading to 3.0.


Regards,
~~helix84

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Re: [Dspace-tech] java.util.NoSuchElementException: Timeout waiting for idle object

2013-04-08 Thread abhishek.kulkarni
I am facing this problem after creation new instance of dspace 3.0.





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Re: [Dspace-tech] java.util.NoSuchElementException: Timeout waiting for idle object

2013-04-08 Thread abhishek.kulkarni
I have created new instance of dspace 3.0, and facing this problem on it.

Thanks,
Abhishek




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Re: [Dspace-tech] importing to the db directly

2013-04-08 Thread Drover, Matt
xmlui and 3.0.

-Original Message-
From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of helix84
Sent: Monday, April 8, 2013 1:14 PM
To: Drover, Matt
Cc: dspace-tech
Subject: Re: [Dspace-tech] importing to the db directly

Which DSpace version, UI and theme are you using?


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette 
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On Mon, Apr 8, 2013 at 5:42 PM, Drover, Matt mattdro...@mun.ca wrote:
 But how do I get it to show up in the bitstreasm list ?

 -Matt

 -Original Message-
 From: ivan.ma...@gmail.com [mailto:ivan.ma...@gmail.com] On Behalf Of 
 helix84
 Sent: Monday, April 8, 2013 12:25 PM
 To: Drover, Matt
 Cc: dspace-tech
 Subject: Re: [Dspace-tech] importing to the db directly

 Simply include the bitstream URL in a metadata field and then render that 
 metadata field as a clickable link.


 Regards,
 ~~helix84

 Compulsory reading: DSpace Mailing List Etiquette 
 https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette

 This electronic communication is governed by the terms and conditions 
 at http://www.mun.ca/cc/policies/electronic_communications_disclaimer_2012.php

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[Dspace-tech] CC support, testing needed

2013-04-08 Thread Tomas Cohen Arazi
Hi, there's are a few patches, regarding CreativeCommons localization
support, waiting for someone to test them. They will provide better
localization support and are pretty trivial to test.

We already use them in production @Universidad Nacional de Córdoba
(currently on 1.8). Our testing platform for the 3.x switch also uses them
successfully.

https://github.com/DSpace/DSpace/pull/103

Thanks in advance
To+
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Re: [Dspace-tech] java.util.NoSuchElementException: Timeout waiting for idle object

2013-04-08 Thread abhishek.kulkarni
Full java stack trace: - 


Caused by: org.xml.sax.SAXException: An error was encountered while
processing the 'aspect.general.PageNotFoundTransformer' Wing based
component: org.dspace.app.xmlui.aspect.general.PageNotFoundTransformer
org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool
error Timeout waiting for idle object
at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.handleException(AbstractDSpaceTransformer.java:109)
at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.setup(AbstractDSpaceTransformer.java:93)
at sun.reflect.GeneratedMethodAccessor45.invoke(Unknown Source)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:616)
at
org.apache.cocoon.core.container.spring.avalon.PoolableProxyHandler.invoke(PoolableProxyHandler.java:71)
at sun.proxy.$Proxy19.setup(Unknown Source)
at
org.apache.cocoon.components.pipeline.AbstractProcessingPipeline.setupPipeline(AbstractProcessingPipeline.java:356)
... 92 more
Caused by: org.apache.commons.dbcp.SQLNestedException: Cannot get a
connection, pool error Timeout waiting for idle object
at
org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:114)
at
org.dspace.storage.rdbms.DatabaseManager.getConnection(DatabaseManager.java:588)
at org.dspace.core.Context.init(Context.java:95)
at
org.dspace.app.xmlui.utils.ContextUtil.obtainContext(ContextUtil.java:72)
at
org.dspace.app.xmlui.utils.ContextUtil.obtainContext(ContextUtil.java:53)
at
org.dspace.app.xmlui.cocoon.AbstractDSpaceTransformer.setup(AbstractDSpaceTransformer.java:78)
... 98 more
Caused by: java.util.NoSuchElementException: Timeout waiting for idle object
at
org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:958)
at
org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:106)



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