Re: [R-sig-phylo] HPD in threshBayes function (phytools)

2023-10-31 Thread Leonardo Matheus Servino 
Dear Liam,

Thank you very much for your reply!

Cheers

Em ter., 31 de out. de 2023 às 16:49, Liam J. Revell 
escreveu:

> Dear Leonardo.
>
> This is covered in Chapter 7, pp. 215-219 of my book with Luke Harmon (
> https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r),
> but don't worry -- I also just posted a solution on my blog:
> http://blog.phytools.org/2023/10/computing-hpd-interval-on-evolutionary.html
> .
>
> I hope this helps you figure out what you need to do!
>
> All the best, Liam
> Liam J. Revell
> Professor of Biology, University of Massachusetts Boston
> Web: http://faculty.umb.edu/liam.revell/
> Book: Phylogenetic Comparative Methods in R
> 
> (*Princeton University Press*, 2022)
>
>
> On 10/30/2023 8:11 PM, Leonardo Matheus Servino wrote:
>
> [You don't often get email from leonardomserv...@gmail.com. Learn why this is 
> important at https://aka.ms/LearnAboutSenderIdentification ]
>
> CAUTION: EXTERNAL SENDER
>
> Dear group,
>
> I am performing analyses using threshBayes from the phytools package. I was
> wondering if someone has ever extracted the highest posterior density
> intervals (HPD) values using this function. How could I make this?
>
> Thanks in advance
>
> --
> Leonardo Matheus Servino
> Pós-graduação em Ecologia
>
> Departamento de Ecologia
> Universidade de São Paulo
> Rua do Matão, Trav. 14, n˚ 101
> Cid. Universitária - São Paulo, SP
> 05508-090
> Brasil
>
> *Lattes 
> 
>   - 
> **ResearchGate
>   - 
> ORCID
>   - 
> LinkedIn
>  *
>
> [[alternative HTML version deleted]]
>
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-- 
Leonardo Matheus Servino
Pós-graduação em Ecologia

Departamento de Ecologia
Universidade de São Paulo
Rua do Matão, Trav. 14, n˚ 101
Cid. Universitária - São Paulo, SP
05508-090
Brasil

*Lattes  - **ResearchGate
 - ORCID
 - LinkedIn
*

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Re: [R-sig-phylo] HPD in threshBayes function (phytools)

2023-10-30 Thread Liam J. Revell 
Dear Leonardo.

This is covered in Chapter 7, pp. 215-219 of my book with Luke Harmon 
(https://press.princeton.edu/books/phylogenetic-comparative-methods-in-r), 
but don't worry -- I also just posted a solution on my blog: 
http://blog.phytools.org/2023/10/computing-hpd-interval-on-evolutionary.html.

I hope this helps you figure out what you need to do!

All the best, Liam

Liam J. Revell
Professor of Biology, University of Massachusetts Boston
Web: http://faculty.umb.edu/liam.revell/
Book: Phylogenetic Comparative Methods in R 
 
(/Princeton University Press/, 2022)


On 10/30/2023 8:11 PM, Leonardo Matheus Servino wrote:
> [You don't often get email fromleonardomserv...@gmail.com. Learn why this is 
> important athttps://aka.ms/LearnAboutSenderIdentification  ]
>
> CAUTION: EXTERNAL SENDER
>
> Dear group,
>
> I am performing analyses using threshBayes from the phytools package. I was
> wondering if someone has ever extracted the highest posterior density
> intervals (HPD) values using this function. How could I make this?
>
> Thanks in advance
>
> --
> Leonardo Matheus Servino
> Pós-graduação em Ecologia
>
> Departamento de Ecologia
> Universidade de São Paulo
> Rua do Matão, Trav. 14, n˚ 101
> Cid. Universitária - São Paulo, SP
> 05508-090
> Brasil
>
> *Lattes  - **ResearchGate
>   - ORCID
>   - LinkedIn
> *
>
>  [[alternative HTML version deleted]]
>
> ___
> R-sig-phylo mailing list -R-sig-phylo@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
> Searchable archive athttp://www.mail-archive.com/r-sig-phylo@r-project.org/
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