Re: [Artemis-users] Export annotated Artemis data to CLC Bio

2010-10-21 Thread Jack van de Vossenberg
Addition: For Artemis export to GFF, I changed fasta_record to source, which is a Feature Key in standard nomenclature*, and added the mandatory fields /organism= and /mol_type=, but every time I get a message that the source field cannot be exported. Is that normal behaviour? Can anyone

Re: [Artemis-users] Export annotated Artemis data to CLC Bio

2010-10-21 Thread Tim Carver
Hi Jack Artemis is not really meant as a conversion tool between formats and in particular EMBL/GenBank to GFF, although it will have a go. You could try EMBOSS (seqret) to convert. However, it sounds like you have multiple fasta records in your file which may cause problems if you are writing