Re: [Artemis-users] launching DnaPlotter with a sequence file

2011-02-21 Thread Tim Carver
Hi Scott Yes it is template driven, so there is no -f option. You can manually create a template or export a template out from a DNAPlotter session. Example templates can be found in the online manual page: http://www.sanger.ac.uk/resources/software/dnaplotter/#t_3 The template then restores

Re: [Artemis-users] artemis inside other software

2011-02-21 Thread Tim Carver
Hi Bernd Thank you for your message. There are command line options for running Artemis and setting various display parameters, e.g. you can open sequences and feature tables from different files from the command line. The options are documented in the user manual. There is no programmer manual

Re: [Artemis-users] launching DnaPlotter with a sequence file

2011-02-21 Thread Tim Carver
Hi Scott No there is no way to do that other than editing an exiting template. Users tend to open the sequence file from the interface and export the template. If you wanted to get this running with a sequence file you could use a wrapper script to take a copy of a dummy template and makes the

Re: [Artemis-users] launching DnaPlotter with a sequence file

2011-02-21 Thread Scott Markel
Tim, Thank you for confirming that sequence files can't be read directly. Is there a common or frequently-used way of creating a template from a sequence file *without* launching DnaPlotter? I'd like the user's first view to be the circular plot. Scott -Original Message- From: Tim