--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 31 84031
-
'oil separation and light ppt' is not necesserily an indicator that
something is wrong with your crystallization condition. Actually,
there are quite a few proteins that only crystallize in conditions
with oil/water-like phase separation. Some crystals even appear WITHIN
the oily drops
***
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 31 84031
-
will be highly appreciated.
Thanks so much in advance!
Jl
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 31 84031
-
Dear all,
scanning the literature, it seems that horse spleen Ferritin has so far been
crystallised only in presence of Cadmium ions. Is this correct? Does anybody
know of conditions lacking Cd?
Clemens
Hi Jennifer,
clear drops can still be brought to supersaturation by:
-transfer to wells with lower vapour pressure: exchange or add LiCl or other
concentrated salt solutions in the reservoir
-temperature gradient: place trays on ice/cold surface while hanging drops are
at higher temperature,
this is also my experience. However, above pH 8, the buffering effect of the
Jeffamines' amino groups starts to be significant and (rough) pre-adjusting of
the pH might be necessary.
Clemens
Quoting Yogesh Gupta PhD [EMAIL PROTECTED]:
Hi Amit,
Changing the pH of Jeffamine is not so easy . I
Dear all,
I wonder if it would be still/again possible to check in a dry shipper for a
flight inside Europe. What is your experience?
Cheers,
Clemens
seems to be a 'non-standard' setting. Refmac also has problems with this
spacegroup, reindexing to P21 21 2 fixed the problem for me.
Clemens
Quoting PhilEvans [EMAIL PROTECTED]:
Is there a reason why Arp/warp doesn't like space group P 21 2 21?
Phil
yes, actually my experience with P 21 2 21 dates back to midyear 2007.
Retesting
with the current refmac version runs fine.
Clemens
Quoting Ian Tickle [EMAIL PROTECTED]:
Victor
'P 21 2 21' *is* the conventional indexing if a = b = c, i.e. it's the
setting agreed for deposition of crystal
Hi Sam,
The effect of reducing agents like beta-ME, DTT or TCEP is exactly as you say,
the prevention of disulphide formation or cleavage of existing disulphide
bridges and therefore prevention of aggregation if inter-molecular disulphide
bridges can be formed.
A balancing of reducing power, or
Dear all,
after re-indexing a dataset I had to re-orient my coordinates accordingly. The
model contains some 24 TLS-tensors.
Now my question is how to apply the rotation matrix also to the TLS-tensors.
What is the mathematical operation and is there a program that can do the job
for me?
Thanks,
that?
Clemens
Quoting Eleanor Dodson [EMAIL PROTECTED]:
I would run the TLS again!
Eleanor
Clemens Grimm wrote:
Dear all,
after re-indexing a dataset I had to re-orient my coordinates
accordingly. The
model contains some 24 TLS-tensors.
Now my question is how to apply the rotation matrix
Hi Jenny,
there are probably as many 'folding enhancers' as there are crystallization
additives. Arginine might only be the most popular, followed by things like
proline and other amino acids. The mode of action of those can partly be
explained by their mild chaotropic properties. For a
of interest, curriculum vitae,
academic certificates and the names and contact details of two referees to:
Dr. Clemens Grimm
Institute for Biochemistry
Biocentre of the University
Am Hubland
D-97074 Wuerzburg
Germany
e-mail: [EMAIL PROTECTED]
to COR or vice versa),
which is unlikely if all you are doing is re-indexing.
Having p=0 (and P=O) of course considerably simplifies the equations,
i.e.:
T' = RTR~
and the same transformation is applied separately to L and S.
Cheers
-- Ian
-Original Message-
From: Clemens Grimm
TCEP is often sold as hydrochloride salt and therefore reacts highly
acidic. We usually titrate the concentrated solution *before* we add
it to our proteins. This can be done within small volumes by dropwise
addition of a saturated TRIS solution, check pH by pipetting a drop on
a pH test
We have tested the Zeiss LED plate with hanging and sitting drop trays
and found it it unsuitable for looking at crystals. The reason is the
really low contrast with this kind of diffuse illumination. Obviously,
contrast is generated by refraction at crystal/mother liquor
interfaces and
Hilgenberg (Malsfeld, Germany) currently offer their remaining stock.
Clemens
Zitat von James Holton jmhol...@lbl.gov:
Does anyone know the formula or supplier of what was once called
Lindemann glass? It is a silicon-free high-boron glass that has
no elements in it heavier than oxygen.
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 888 84031
-
and the names and contact
details of two referees to:
Dr. Clemens Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Institute für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
--
Dr. Clemens Grimm
14, 2009 at 09:35:28AM +0200, Clemens Grimm wrote:
Dear all,
after the SeMet phasing discussion, what would be -in general- the best
technique to phase low resolution data (=4A) of large complexes (=150
kDA) - in terms of
- derivatization compounds (is there something like the 'golden five' HA
Dear all,
is the Rupp Segelke CRYSTOOL still accessible somewhere? The old link
http://www-structure.llnl.gov/crystool/crystool.htm
seems not to work anymore. Or are there alternatives?
Thanks
Clemens
Zitat von George DeTitta deti...@hwi.buffalo.edu:
I'd appreciate it if people could tell me their experiences with what I
would call phantom crystals, or ghost crystals. These are objects
that display the seeming morphology of crystals (clear facets, sharp
edges)
... There is also a second
,
curriculum vitae, academic certificates and the names and contact
details of two referees to:
Dr. Clemens Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
web: www.biozentrum.de
Checking Cryo-Conditions under the microscope can actually be very
useful. Even if you have access to a X-ray beam, simple pre-tests can
be very informative.
This can be done as follows:
A 24well plate cover is placed on a stereo microscope open side down,
a second one on top of it the
,
curriculum vitae, academic certificates and the names and contact
details of two referees to:
Dr. Clemens Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
web: www.biozentrum.de
Dear all,
has anybody set up successfully a batch queue for ccp4i under SUSE linux?
Regards,
Clemens
Zitat von marc.schi...@epfl.ch:
Dale Tronrud wrote:
While it is true that angles are defined by ratios which result in
their values being independent of the units those lengths were measured,
common sense says that a number is an insufficient description of an
angle. If I tell you I
Dear all,
I would like to set manually cell and SG in the iMosflm interface - is
this possible?
Thanks
Clemens
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail
opportunity employer with an
affirmative action program for the disabled.
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49
Laboratory
F. Searle 1-240
2240 Campus Drive
Evanston IL 60208
lab: 847.491.2438
cel: 773.608.9185
email: j-kell...@northwestern.edu
***
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Zitat von Imre Toeroe t...@embl.de:
Hi,
this might be relevant here:
http://scripts.iucr.org/cgi-bin/paper?S0907444995000436
Yes! thanks for the link.
Imre
Clemens Grimm wrote:
regardless of what such a (kinetic) calculator will calculate at the end -
we will have to feed it with data
?
Jack
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 888 84031
-
could be reduced by 30-50%; AND
if the end-product is the data, not the crystals . . .
do you still think (profit) margins would be nominal?
Is your assessment of very low margins based on assumed
very high costs?
Jack
--
Dr. Clemens Grimm
School of Life Sciences
JNU
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 31 84031
-
with
heavy atoms and the origin of coordinates of the molecular model?
Thank you!
Natalia
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
phone: +49 (0)551 39 22149
GPG Key ID = A46BEE1A
--
Dr. Clemens
. Clemens Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Lehrstuhl für Biochemie
Biozentrum der Universitaet Wuerzburg
Am Hubland
D-97074 Wuerzburg
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D
protein constructs
and complexes for structural studies.
Please send your application including a letter of interest,
curriculum vitae and academic certificates to:
Dr. Clemens Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Lehrstuhl für Biochemie
Biozentrum der Universitaet Wuerzburg
Am
Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Lehrstuhl für Biochemie
Biozentrum der Universitaet Wuerzburg
Am Hubland
D-97074 Wuerzburg
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074
Grimm
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
Lehrstuhl für Biochemie
Biozentrum der Universitaet Wuerzburg
Am Hubland
D-97074 Wuerzburg
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074
0 particles
Versions tested are EMAN 2.21a final and EMAN 2.2 final. Are we doing
something wrong or is this a bug? Any help appreciated.
Clemens
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 0931 31 84031
with ccp4
On Thu, 4 Jun 2020 at 15:41, Clemens Grimm <
clemens.gr...@biozentrum.uni-wuerzburg.de> wrote:
Dear All,
accessing the COOT download pages at
http://www.ysbl.york.ac.uk/~emsley/software/binaries/nightlies/pre-release/
gives me an
"The requested URL /~emsley/software/binaries/
own or has it moved?
Thanks,
Clemens
--
Dr. Clemens Grimm
Institut für Biochemie
Biozentrum der Universität Würzburg
Am Hubland
D-97074 Würzburg
Germany
e-mail: clemens.gr...@biozentrum.uni-wuerzburg.de
phone : +49 093
I figured out that setting 'Particle diameter' from default=-1 to a
positive value results in single picks.
Zitat von Clemens Grimm :
Dear Developers and Users,
after picking with a model trained with a pre-classified particle
set, I get the following situation (see attached picture
directly:
Utz Fischer (utz.fisc...@uni-wuerzburg.de) or
Clemens Grimm (clemens.gr...@uni-wuerzburg.de)
To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1
of Biochemistry.
For further information, please contact
Utz Fischer utz.fisc...@uni-wuerzburg.de Tel.: +49
931-3184029 or
Clemens Grimm clemens.gr...@uni-wuerzburg.de Tel.: +49 931-3184031
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