Re: [COOT] problems of version 0.6

2009-05-07 Thread Paul Emsley
Maia Cherney wrote: The general torsion function is not as good as the torsion in old X-fit. Are you or have you ever been a member of the von Delft Pressure Group? In x-fit you click on two atoms of a single bond and you can rotate the rest of the molecule around that bond. This bond can

Re: [COOT] problems of version 0.6

2009-05-07 Thread Maia Cherney
Paul, Bernhard, Thank you for your reply. I am using version: 0.6-pre-1 (revision 1950) [with guile 1.6.8 embedded]. I will upgrade it with gtk2 in the name. Thank you for working on the torsion thing. Well, now help me with key-bindings, please. I need one or two buttons on the mouse for

Re: [COOT] problems of version 0.6

2009-05-06 Thread Maia Cherney
Thank you, Bernhard The buttons I like to change are internally assigned. For example, I would prefer to use key b to move backwards through residues of a chain. Right now you need two hands for that (shift-space). To drag the map, again, you need two hands (ctrl-left mouse). I would like to

Re: [COOT] problems of version 0.6

2009-05-06 Thread Bernhard Lohkamp
Thank you for your reply. The version number is 0.6-pre-1. .. and the revision number? Using $coot --version you get more information (which is useful for us, e.g. revision number, python yes or no). Also, in the Edit menu of this version I could not find preferences. I definitely need

Re: [COOT] problems of version 0.6

2009-05-05 Thread Bernhard Lohkamp
I tried today the new version (-0.6) and see some problems. In general it helps if you can give revision numbers as things move quickly (especially in the pre-releases). 1. Simple mutate for nucleotides. The program makes Gr, Cr etc. in DNA (should be Gd, Cd etc). And it does not mutate

Re: [COOT] problems of version 0.6

2009-05-05 Thread Paul Emsley
Leonid Cherney wrote: I tried today the new version (-0.6) and see some problems. 1. Simple mutate for nucleotides. The program makes Gr, Cr etc. in DNA (should be Gd, Cd etc). And it does not mutate to thymine at all, because there is no Tr. Where can I say that it's a DNA? This has been