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Hi Emilio,
for publication purposes you can get something similar to carving by
setting the map radius in Coot, creating a Raster3D output file and
adjusting front and back clip. Not perfect and difficult for fine
tuning, but it's a step in the right
Emilia:
It appears to me that based on discussion on the CCP4BB by Thomas Holder and
James Holton that you should do the following:
· Run MAPMASK twice, first on an asymmetric unit to normalize, and a
second time to extend the map over your molecule
· Issue the command
Tim,
do the absolute values matter? I tend to adjust the level (visually)
so that the map shows what I want to show. Usually the pictures show
some of the environment so that one can judge the map level by
comparison, rather than absolute numbers. The scale always seemed very
inexact and
Thanks Paul.
To help with others' future Googling efforts on the topic of PyMOL versus
Coot map levels, I'll leave here the link to the discussion that began from
my initial post, on the ccp4bb:
https://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg39219.html
Alternatively, does anyone have
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Dear Emilia, hi Paul,
do the absolute values matter? I tend to adjust the level (visually)
so that the map shows what I want to show. Usually the pictures show
some of the environment so that one can judge the map level by
comparison, rather than
On 29/05/15 21:15, Emilia C. Arturo (Emily) wrote:
Hello.
I am struggling with an old question--old because I've found several
discussions and wiki bits on this topic, e.g. on the PyMOL mailing
list (http://sourceforge.net/p/pymol/mailman/message/26496806/ and
