Re: [COOT] two suggestions

2015-05-27 Thread Jan Stransky
You can already click on residue symbols in Coot's Ramachandran, which will focus you on that residue... A table you can get from Molprobity webservice, but it is not clickable though... Cheers, Jan On 05/25/2015 06:22 PM, Shane Caldwell wrote: If I might add as well to Oliver's suggestions,

Re: [COOT] two suggestions

2015-05-27 Thread Oliver Clarke
Hi Jan - yes, that is true, of course - but when you have 1000+ residues the plot gets rather crowded and this becomes not as practical. Cheers, Oliver. On Wed, 27 May 2015 10:54:55 +0200, Jan Stransky stran...@ibt.cas.cz wrote: You can already click on residue symbols in Coot's Ramachandran,

Re: [COOT] two suggestions

2015-05-25 Thread Oliver Clarke
Also along the same lines, I would love to see a local ramachandran - a ramachandran plot, but only displaying those residues within a certain distance from the center of rotation, say 20 Å. The ramachandran plot is very handy for validation and identification of troublesome regions, but it

Re: [COOT] two suggestions

2015-05-25 Thread Shane Caldwell
If I might add as well to Oliver's suggestions, an option to jump to questionable/bad ramachandrans would be useful at the validation stage. A list like the residues with missing atoms / residues with alt confs functions would be a quick way to inspect these without having to track them down in a