Re: [COOT] Default B-factor for new residues

2015-05-17 Thread Bernhard Lohkamp
This is fixed in r5695 (B-factors of side chain atoms having default B that is). Setting (refining?!) B-factors more intelligently is on the list, but requires a bit more sophistication than just adapting it from neighbouring residues (who says these are right(ish)?!). B On 16/05/2015

Re: [COOT] Default B-factor for new residues

2015-05-17 Thread Oliver Clarke
Thanks for fixing that Bernhard! I agree that maybe setting the B-factor based on adjacent residues might be a bit risky, so Eleanor's suggestion of setting it based on the average B for the molecule or chain sounds like a good interim solution. That value is unlikely to be wrong, at least

[COOT] symmetry related molecules

2015-05-17 Thread Joel Tyndall
Hi all, I have a structure that we have almost completed (2.66 A ) and the space group is P1, R factor is around 0.20940.25. When I turn on cell symmetry to see related symmetry molecules, there are cases that some related molecules can be seen and a specific case where there is an

Re: [COOT] symmetry related molecules

2015-05-17 Thread Joel Tyndall
Oops, meant to say its 2 molecules per asymmetric unit J From: Mailing list for users of COOT Crystallographic Software [mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Joel Tyndall Sent: Monday, 18 May 2015 4:11 p.m. To: COOT@JISCMAIL.AC.UK Subject: symmetry related molecules Hi all, I have a

Re: [COOT] Default B-factor for new residues

2015-05-17 Thread Eleanor Dodson
At least it would be good to set new residues to the overall B value. Eleanor On 17 May 2015 at 17:57, Bernhard Lohkamp bernhard.lohk...@ki.se wrote: This is fixed in r5695 (B-factors of side chain atoms having default B that is). Setting (refining?!) B-factors more intelligently is on the