Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Steffen Möller
On 28.07.21 14:27, Nilesh Patra wrote: Hi Steffen, On 28/07/21 01:06 PM, Steffen Möller wrote: Hi Nilesh, The import of pristine-tar has worked after removing .gitattributes, but then the git lfs references were still in the tarball and the upstream branch. pristine-tar could be

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Nilesh Patra
Hi Steffen, On 28/07/21 01:06 PM, Steffen Möller wrote: > Hi Nilesh, > > > The import of pristine-tar has worked after removing .gitattributes, but > > > then the git lfs references were still in the tarball and the > > > upstream branch. pristine-tar could be pushed, but then the other > >

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-28 Thread Steffen Möller
Hi Nilesh, On 27.07.21 23:53, Nilesh Patra wrote: On 28 July 2021 3:00:08 am IST, Nilesh Patra wrote: Hi Steffen, On Tue, 27 Jul 2021 at 23:05, Steffen Möller wrote: Hi Nilesh, Thank you tons for thinking along. It took me a bit but. Too long. The answer is that git does not lose the

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-27 Thread Nilesh Patra
On 28 July 2021 3:00:08 am IST, Nilesh Patra wrote: >Hi Steffen, > >On Tue, 27 Jul 2021 at 23:05, Steffen Möller >wrote: > >> Hi Nilesh, >> >> Thank you tons for thinking along. >> >> It took me a bit but. Too long. The answer is that git does not lose >the >> sensation of a file being a git

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-27 Thread Nilesh Patra
Hi Steffen, On Tue, 27 Jul 2021 at 23:05, Steffen Möller wrote: > Hi Nilesh, > > Thank you tons for thinking along. > > It took me a bit but. Too long. The answer is that git does not lose the > sensation of a file being a git lfs reference even when you download a > tar.gz. For some reason I

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-27 Thread Steffen Möller
Hi Nilesh, Thank you tons for thinking along. On 27.07.21 17:47, Nilesh Patra wrote: On Tue, 27 Jul, 2021, 9:02 pm Steffen Möller, mailto:steffen_moel...@gmx.de>> wrote: Hello, This package is one of the closest that we have on our radar to suit virologists, to I went for CATCH

Re: Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-27 Thread Nilesh Patra
On Tue, 27 Jul, 2021, 9:02 pm Steffen Möller, wrote: > Hello, > > This package is one of the closest that we have on our radar to suit > virologists, to I went for CATCH from the broad institute at > https://github.com/broadinstitute/catch . Conda has it already, does not > surface on bio.tools,

Broadinstitute catch - elegant way to disable tests requiring online access?

2021-07-27 Thread Steffen Möller
Hello, This package is one of the closest that we have on our radar to suit virologists, to I went for CATCH from the broad institute at https://github.com/broadinstitute/catch . Conda has it already, does not surface on bio.tools, though. Testing takes quite a while (~15mins) and the few that