Am 23.05.21 um 11:37 schrieb Nilesh Patra:
>
> On 23 May 2021 2:06:00 pm IST, Andreas Tille wrote:
>> Hi Nilesh,
>>
>> On Sun, May 23, 2021 at 03:32:55AM +0530, Nilesh Patra wrote:
>>> PS: Please check and upload vbz-compression whenever you have time
>> (after two days as you wrote would be
The vcflib installer drops the R scripts
https://github.com/vcflib/vcflib/blob/master/CMakeLists.txt#L189
not sure you'd want those?
Pj.
On Sun, May 23, 2021 at 03:47:02PM +0200, Michael R. Crusoe wrote:
>Thanks for catching this, Steffen!
>A bug report would be appreciated, so we
After a look at the CMakeLists.txt file, I very much get the impression
that the current vcflib package also misses the BINs, not ony the SCRIPTs.
Best,
Steffen
Am 23.05.21 um 17:02 schrieb Pjotr Prins:
> The vcflib installer drops the R scripts
>
>
https://salsa.debian.org/med-team/catfishq
is ready for review+sponsoring.
Many thanks!
Steffen
Am 23.05.21 um 16:18 schrieb Steffen Möller:
>
>
> Am 23.05.21 um 14:26 schrieb Steffen Möller:
>> Am 23.05.21 um 00:02 schrieb Nilesh Patra:
>>> On 5/23/21 2:54 AM, Andreas Tille wrote:
On Sat,
On Sun, May 23, 2021 at 06:16:42PM +0200, Steffen Möller wrote:
> https://salsa.debian.org/med-team/catfishq
> is ready for review+sponsoring.
> Many thanks!
Hello Steffen, hi Debian Med@
Since I have worked on the fastqc package in the past and am trying to
increase my knowledge about FASTQ in
Hi Michael,
I'd happily address this rightaway, but what do you suggest? A separate
arch-indep package sounds appropriate to me.
On a sidenote - the Nanopore Structural Variant pipeline also needs vcfsort.
Best,
Steffen
Am 23.05.21 um 15:47 schrieb Michael R. Crusoe:
> Thanks for catching
Am 23.05.21 um 18:30 schrieb tony mancill:
> On Sun, May 23, 2021 at 06:16:42PM +0200, Steffen Möller wrote:
>> https://salsa.debian.org/med-team/catfishq
>> is ready for review+sponsoring.
>> Many thanks!
> Hello Steffen, hi Debian Med@
>
> Since I have worked on the fastqc package in the past
On 5/23/21 10:00 PM, tony mancill wrote:
> On Sun, May 23, 2021 at 06:16:42PM +0200, Steffen Möller wrote:
>> https://salsa.debian.org/med-team/catfishq
>> is ready for review+sponsoring.
>> Many thanks!
>
> Hello Steffen, hi Debian Med@
>
> Since I have worked on the fastqc package in the
Thanks for catching this, Steffen!
A bug report would be appreciated, so we don't lose track of this.
--
Michael R. Crusoe
On Sun, May 23, 2021, 14:51 Steffen Möller wrote:
> Hello,
>
> cudaSV needs bgziptabix to be happy, which is how I became aware fo all
> the scripts in
>
> Med/libvcflib$
On 5/23/21 5:56 PM, Steffen Möller wrote:
>
> Am 23.05.21 um 00:02 schrieb Nilesh Patra:
>>
>> On 5/23/21 2:54 AM, Andreas Tille wrote:
>>> On Sat, May 22, 2021 at 09:10:46AM +0200, Andreas Tille wrote:
On Fri, May 21, 2021 at 09:26:48PM +0200, Steffen Möller wrote:
> If someone needs
Am 23.05.21 um 14:26 schrieb Steffen Möller:
> Am 23.05.21 um 00:02 schrieb Nilesh Patra:
>> On 5/23/21 2:54 AM, Andreas Tille wrote:
>>> On Sat, May 22, 2021 at 09:10:46AM +0200, Andreas Tille wrote:
On Fri, May 21, 2021 at 09:26:48PM +0200, Steffen Möller wrote:
> If someone needs a
Hello,
cudaSV needs bgziptabix to be happy, which is how I became aware fo all
the scripts in
Med/libvcflib$ ls scripts/
bed2region plotXPEHH.R vcfindelproximity
vcfnulldotslashdot vcfregionreduce_and_cut
bgziptabix vcf2bed.py vcfindels
Hi Nilesh,
On Sun, May 23, 2021 at 03:32:55AM +0530, Nilesh Patra wrote:
> PS: Please check and upload vbz-compression whenever you have time (after two
> days as you wrote would be fine anyway)
> I'll be inactive/be away for a couple of days (wish to take a break :-))
I've renamed the binary
On 23 May 2021 2:06:00 pm IST, Andreas Tille wrote:
>Hi Nilesh,
>
>On Sun, May 23, 2021 at 03:32:55AM +0530, Nilesh Patra wrote:
>> PS: Please check and upload vbz-compression whenever you have time
>(after two days as you wrote would be fine anyway)
>> I'll be inactive/be away for a couple of
Am 23.05.21 um 00:02 schrieb Nilesh Patra:
>
> On 5/23/21 2:54 AM, Andreas Tille wrote:
>> On Sat, May 22, 2021 at 09:10:46AM +0200, Andreas Tille wrote:
>>> On Fri, May 21, 2021 at 09:26:48PM +0200, Steffen Möller wrote:
If someone needs a stimulus to package something - cuteSV
Hi Nilesh,
On Sun, May 23, 2021 at 03:07:09PM +0530, Nilesh Patra wrote:
> >now and I've also uploaded to new. I admit I forgot for what
> >final target I was working on this lib. :-(
>
> This was the final target: https://salsa.debian.org/med-team/ont-fast5-api
I've commited some changes to
Am 24.05.21 um 00:36 schrieb tony mancill:
> On Sun, May 23, 2021 at 11:36:43PM +0530, Nilesh Patra wrote:
>> On 5/23/21 10:00 PM, tony mancill wrote:
>>> On Sun, May 23, 2021 at 06:16:42PM +0200, Steffen Möller wrote:
https://salsa.debian.org/med-team/catfishq
is ready for
Nanoplot was blocked by the tricky-to-package orca extension of plotly.
Orca seems to be substitute by kaleido, which is also tricky to package.
The idea is to use some magic of chromium that is made available via
docker to craft an executable that can transform SVGs in web outputs. I
am tempted
Hi,
Few days earlier I ran a script which changed the default file to
d/salsa-ci.yml
So basically every package in the med-team has the default config file set
to d/salsa-ci.yml and pushing to any repository will trigger the CI
[ **NOTE: please don't mass push to hundreds of repos at once** ]
On Sun, May 23, 2021 at 11:36:43PM +0530, Nilesh Patra wrote:
> On 5/23/21 10:00 PM, tony mancill wrote:
> > On Sun, May 23, 2021 at 06:16:42PM +0200, Steffen Möller wrote:
> >> https://salsa.debian.org/med-team/catfishq
> >> is ready for review+sponsoring.
> >> Many thanks!
> >
> > Hello
Thanks a lot for this Nilesh!
On Mon, May 24, 2021 at 03:10:02AM +0530, Nilesh Patra wrote:
> Hi,
>
> Few days earlier I ran a script which changed the default file to
> d/salsa-ci.yml
>
> So basically every package in the med-team has the default config file set
> to d/salsa-ci.yml and pushing
On Mon, May 24, 2021 at 01:26:47AM +0200, Steffen Möller wrote:
>
> Should there be a bug report about the missing test data in the pypi
> tarball?
May be. But to my observation it is very common that the PyPI tarball
is lacking something we can profit for our packaging. That's why I
prefer
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