Re: [Dspace-tech] Search problem in DSpace 5.2 Mirage2

2015-08-26 Thread Andrea Schweer

  
  
Hi George,

On 27/08/15 04:43, George Stanley Kozak
  wrote:


  
  
  
  I wrote to the list back in July about a
search problem that we were having with DSpace 5.2 XMLUI Mirage
2 theme.
The problem was that if you did a search of
  a phrase (such as “Cornell University”), your search results
  would contain the word “Cornell” and the word “University”. 
  In effect, the search was ignoring the quotes and giving you
  an “OR” search instead of an “AND” search.
 
Bram Luyten confirmed that this was
  happening on the demo site. 
  
 
I haven’t heard anything since then, and I
  wonder if this is planned to be fixed.  I have some users
  pretty upset about this and the complaints are making their
  way up my management chain
  L
 
Anyway help that I can get would be great!
  


I filed a search-related bug report a little while ago (though I
could probably have picked a better title):
https://jira.duraspace.org/browse/DS-2699 -- this issue currently
needs a volunteer.

I wouldn't be surprised if what you're seeing is caused by the same
thing, basically, somewhat overzealous escaping of special
characters in the search (which was introduced to fix a bug I had
unfortunately snuck into DSpace 5.2, which in turn was intended to
fix issues with searching for phrases containing colons).

Is the behaviour you're seeing limited to Mirage 2/XMLUI?

cheers,
Andrea

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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] DSpace 5.3 missing link in Inactive account error message

2015-08-26 Thread Andrea Schweer
Hi,

On 27/08/15 01:57, Brouns, Francis wrote:
 a minor issue in Dspace 5.3. When an user with an account that has not yet 
 been verified asks for a new password, a message is shown about the account 
 being inactive. The message contains a link to register. This link is not 
 set, instead {0} is shown.

This sounds like a bug to me -- I've opened a Jira issue: 
https://jira.duraspace.org/browse/DS-2727 I'm assuming you encountered 
this in JSPUI?

Next time, you might like to report the issue yourself; that way your 
name will be associated with the bug report and you will be kept updated 
on the progress.

In the meantime, you could try rephrasing the message string so that it 
no longer contains an apostrophe. Or you could try putting in a double 
apostrophe, that method works in the e-mail templates but I don't know 
whether it works in JSPUI.

cheers,
Andrea

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Re: [Dspace-tech] iOS (iphone/ipad) scrolling on Mirage2 sites

2015-08-25 Thread Andrea Schweer
Hi Peter,

On 26/08/15 09:24, Peter Dietz wrote:
 I was wondering if anyone is having difficulty / hear reports that 
 mirage2 sites do not scroll on iOS / iPhone / iPad Safari?

 Using Xcode's iOS simulator, as well as browser stack, there are some 
 mirage2 sites that I have used that do not scroll.

 https://openknowledge.worldbank.org/
 https://cache.kzoo.edu/
 http://dc.statelibrary.sc.gov/

 Other browsers (chrome, IE, opera, firefox) don't appear to have this 
 issue, and safari on Mac appears to work fine. Mirage2 bug or Safari 
 iOS bug?

I just asked someone here to try and she reported it works fine both for 
the World Bank link you gave and a somewhat customised Mirage 2 on a 
local test instance. Safari on Iphone 6+, iOS 8.1.3.

So maybe a bug with a specific version of iOS/the simulator?

cheers,
Andrea

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Re: [Dspace-tech] DSpace 5.3 and Google Analytics

2015-08-23 Thread Andrea Schweer
Hi Sean,

On 21/08/15 23:15, Sean Carte wrote:
 When I download an item from my repository I have to wait for 
 google-analytics to respond. When the network gets busy this causes 
 delays and even time-outs.

 [...]

 Is there some way that I can prevent DSpace from attempting to contact 
 google-analytics?

I believe you can do this by commenting out the Google Analytics bean 
here: 
https://github.com/DSpace/DSpace/blob/master/dspace-xmlui/src/main/webapp/WEB-INF/spring/applicationContext.xml#L55
 
That should stop DSpace from trying to log bitstream views with Google 
Analytics.

You might also like to file a bug 
(https://jira.duraspace.org/browse/DS); logging statistics really 
shouldn't prevent the user from downloading the file! It looks like 
there's been a similar discussion for JSPUI: 
https://jira.duraspace.org/browse/DS-1925.

cheers,
Andrea

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Re: [Dspace-tech] additions module dependency on dspace-api

2015-08-19 Thread Andrea Schweer
Hi Terry,

On 20/08/15 08:45, Terry Brady wrote:
 I am starting our upgrade from DSpace 4 to DSpace 5.

 Our code base contains only the dspace folder rather than the full 
 source distribution (dspace, dspace-api, etc).

 All of our custom code resides in dspace/modules including 
 dspace/modules/additions.

 Our additions module has a compile dependency on dspace-api and will 
 not compile unless dspace-api-5.4-SNAPSHOT.jar has already been 
 installed in the maven repository.

Is there a particular reason you're doing the upgrade work against 
(unreleased, may never happen) version 5.4? Your issue with having to 
build dspace-api separately would go away if you worked against DSpace 
5.3, since maven could then retrieve dspace-api, dspace-xmlui etc from 
maven central. With your code set-up, the DSpace version is set in 
dspace/pom.api.

cheers,
Andrea

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Re: [Dspace-tech] DSpace 5.1 - oai 500

2015-08-17 Thread Andrea Schweer
Hi Kostas,

On 17/08/15 23:52, Konstantinos Koumoutsos wrote:
 [root@nemertes html]# /data/dspacenew/bin/dspace oai import -c
 [...]
 Caused by: com.ctc.wstx.exc.WstxIOException: Invalid white space 
 character (0x17) in text to output

I'd guess that this means one of your items has this character in its 
metadata. I'm not sure how you'd go about finding the culprit. Is there 
any more information in the DSpace log file?

cheers,
Andrea

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Re: [Dspace-tech] input form input-type metadata validation

2015-08-12 Thread Andrea Schweer

  
  
Hi,

On 12/08/15 22:53, Saidy Binta wrote:


  
  
  
  I want to be able to validate a specific
field input-type  on the input form to only allow numbers of 4
digit length. The input-type text should only allow text instead
of alphanumeric.
I have try using number and text on the
  input-type but keep having errors. Please if someone has
  implement this can you kindly help me out or point me to the
  right direction. Thanks
  


DSpace doesn't support the behaviour you describe. If you absolutely
need to validate the input forms data and don't want to customise
core DSpace code, your best bet would probably be to add custom
_javascript_ that does this task. 

cheers,
Andrea

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Re: [Dspace-tech] CC Licence step not completing?

2015-08-11 Thread Andrea Schweer
Hi Mike,

thanks for the extra information -- I agree, there's nothing obvious.

The text you see appear in the metadata comes from here: 
https://github.com/DSpace/DSpace/blob/59f07bd4dab763eaff050a04ce65dd87a4ac84c6/dspace-api/src/main/java/org/dspace/license/CCLookup.java#L399
 
which to me suggests that either the licence document wasn't received 
from CC or doesn't have structure expected by the code. Strangely 
enough, the code just above the one that creates this text logs a 
warning level message, which doesn't appear to come through in your log.

I don't use JSPUI and I don't have time to dig into this more, sorry. 
Hopefully someone else here can help you.

cheers,
Andrea

On 11/08/15 22:28, Michael White wrote:
 Hi Andrea,

 Is there anything useful in the dspace log file?
 Not really - running at DEBUG, I can see when the CC Licence step is being 
 accessed - the below snippet is what I get when I click Next to go to the 
 CC Licence step:

 2015-08-11 11:06:16,803 DEBUG 
 org.dspace.app.webui.servlet.SubmissionController @ Calling Step Class: 
 'org.dspace.submit.step.CCLicenseStep'
 2015-08-11 11:06:16,805 DEBUG org.dspace.app.webui.submit.JSPStepManager @ 
 Doing pre-processing for step org.dspace.app.webui.submit.JSPStepManager
 2015-08-11 11:06:17,294 DEBUG org.dspace.storage.rdbms.DatabaseManager @ 
 Running query SELECT * FROM MetadataValue WHERE resource_id= ? and 
 resource_type_id = ? ORDER BY metadata_field_id, place  with parameters: 91,1
 2015-08-11 11:06:17,295 DEBUG org.dspace.app.webui.util.JSPManager @ 
 michael.wh...@stir.ac.uk:session_id=7FF301D30EC1B9F9E67AFAB59C07A542:ip_addr=139.153.115.7:view_jsp:/submit/creative-commons.jsp

 - but as I select radio buttons on the CC Licence page, and click Select a 
 Licence, things appear to proceed in the browser but nothing else is logged 
 beyond this point - when I click Select a licence to determine the 
 appropriate CC licence - I'm presented with a page that says:

 
 provided by Creative Commons
 You have selected the Attribution 4.0 International License.
 This licence is permanently located at
 http://creativecommons.org/licenses/by/4.0/.

 You may now proceed
 

 - with proceed being a hyperlink that points to: 
 http://datastorre.stir.ac.uk/submit/cc-license.jsp?license_url=http%3A//creativecommons.org/licenses/by/4.0/,
  but when I click that link on the CC Licence page, the iFrame just goes 
 blank and nothing further happens (so I can't get beyond this step), and 
 nothing is added to the logs beyond the log entries that appeared when I 
 first accessed the CC Licence step :-(

 If I Cancel out from the empty page, and then Save, and then go back in to 
 Edit the record, I can see that the value An error occurred on the license 
 name. has been added to dc.rights, and an empty (bar one line containing 
 result) license_rdf file has been added to the bitstreams . . . .

 HTTPS vs HTTP should not make any difference to this. However, a network
 proxy would -- does your DSpace instance have direct access to the Internet?
 I believe so (we've not had a web proxy here for many years), but I don't 
 work at that level so I'm not 100% sure (but I'm certainly going to double 
 check) - the fact that I do get the page that shows the licence that applies 
 suggests to me that my DSpace is making contact with Creative Commons, but I 
 could be mistaken (is the licence selection logic held in DSpace, or is this 
 retrieved from CC in real time?). Is the behaviour I'm seeing (i.e. that CC 
 Licence selection appears to complete up to the point of clicking Proceed 
 when it hangs) what would happen if a proxy was in play but not configured in 
 DSpace?

 So, I'm still stuck with this - does anyone have this working in v5.2, JSPUI? 
 Did this just work for you after uncommenting the step in 
 item-submission.xml? or did you have to do anything special to get it working?

 Many thanks as ever,

 Mike

 Michael White
 eLearning Developer
 Information Services

 T: (01786) 466877
 E: michael.wh...@stir.ac.uk
 A: S8, Library, University of Stirling, Stirling, FK9 4LA


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Re: [Dspace-tech] subscribe to stats

2015-08-10 Thread Andrea Schweer
Hi,

On 11/08/15 06:23, Jose Blanco wrote:
 In Dspace 4.2 can users subscribe to receive stats on items they 
 deposit?  I can't find any documentation on that.

You can't find any documentation on such a feature because it doesn't exist.

cheers,
Andrea

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Re: [Dspace-tech] CC Licence step not completing?

2015-08-10 Thread Andrea Schweer
Hi Mike,

On 11/08/15 01:23, Michael White wrote:
 Running DSpace v5.2 with JSPUI. Configured to run over https (which may, or 
 may not, be behind this issue?).

 I’ve just been having a play with the Creative Commons licence selection step 
 but it doesn’t seem to be working for me so I’m wondering if I’ve done 
 something wrong, or hit a known issue?

 I’ve “switched on” the CC License step by uncommenting it in 
 item-submission.xml.

 The CC licence selection step now appears as expected (in an iFrame), and I 
 can select radio buttons and click Select a Licence - the selection process 
 appears to work as I get a page back that shows the selected licence, but 
 when I click on the proceed link, the page just hangs and I'm not moved on 
 to the next step :-(

Is there anything useful in the dspace log file?

HTTPS vs HTTP should not make any difference to this. However, a network 
proxy would -- does your DSpace instance have direct access to the 
Internet? If not then you'll have to set up the proxy details in 
dspace.cfg 
https://wiki.duraspace.org/display/DSDOC5x/Configuration+Reference#ConfigurationReference-ProxySettings

Perhaps setting this in dspace.cfg isn't enough for Creative Commons 
though, see the most recent comment here: 
https://jira.duraspace.org/browse/DS-2151?focusedCommentId=42205page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-42205

cheers,
Andrea

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Re: [Dspace-tech] retrospectively assigning DOIs to live items

2015-08-03 Thread Andrea Schweer
Hi Pascal,

On 03/08/15 21:04, Becker, Pascal-Nicolas wrote:
 On 03/08/15 1:48 AM, Andrea Schweer wrote:
 On 03/08/15 11:16, Claudia Jürgen wrote:
 yes this is right. If you enable the identifier service this will only
 cover new items.
 Assuming you are using the DataCite Connector,  the easiest way would
 be to manipulate the database (usual warnings about that) to give the
 old items the status of newly items in archive:
 INSERT into doi (doi_id, doi, resource_type_id, resource_id, status)
 SELECT nextval('doi_seq'),

 concat('YOURPREFIX/YOURNAMESPACESEPARATOR-',currval('doi_seq')), 2,
 item_id, 7 FROM item WHERE in_archive=true and item_id not in (select
 resource_id from doi where resource_type_id=2);

 Then the cron job for the usual doi-organiser commands will pick up the job.

 Perfect, thanks a lot for that!
 It should be easy to add a command in the doi-organiser that adds those 
 entries into the database. I just didn't had the use case and the time. ;-)

All good :) It just wasn't obvious to me from the documentation. Perhaps 
I'll have the time to change the docs / add this functionality to 
doi-organiser, but no promises -- I have the use case but not 
necessarily the time...

cheers,
Andrea

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[Dspace-tech] retrospectively assigning DOIs to live items

2015-08-02 Thread Andrea Schweer
Hi all,

I'm looking into switching on DOIs for an existing DSpace repository 
with ~1,000 live items. We'd like to retrospectively generate DOIs for 
the live items. How do I do that? The documentation about the 
doi-organiser tool [1] says Currently you cannot generate new DOIs with 
this tool. You can only send information about changes in your local 
DSpace database to the registration agency.

Does this mean I'd have to figure out how to change the state of the 
already live items to whatever the starting point of doi-organiser is 
(presumably to be reserved)?

cheers,
Andrea


[1] 
https://wiki.duraspace.org/display/DSDOC5x/DOI+Digital+Object+Identifier#DOIDigitalObjectIdentifier-CommandLineInterface

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Re: [Dspace-tech] retrospectively assigning DOIs to live items

2015-08-02 Thread Andrea Schweer
Hi Claudia,

On 03/08/15 11:16, Claudia Jürgen wrote:
 yes this is right. If you enable the identifier service this will only
 cover new items.
 Assuming you are using the DataCite Connector,  the easiest way would be
 to manipulate the database (usual warnings about that) to give the old
 items the status of newly items in archive:
 INSERT into doi (doi_id, doi, resource_type_id, resource_id, status)
 SELECT nextval('doi_seq'),

 concat('YOURPREFIX/YOURNAMESPACESEPARATOR-',currval('doi_seq')), 2, item_id, 
 7 FROM item
 WHERE in_archive=true and item_id not in (select resource_id from doi where 
 resource_type_id=2);

 Then the cron job for the usual doi-organiser commands will pick up the job.

Perfect, thanks a lot for that!

 I've just been investigating the use of doi's for us. There are a couple of 
 issues with it, especially the datacite connector crosswalk and data 
 provider, see the latest JIRA issues.
 At the moment with datacite the update of metadata does not work among other 
 things.

Good to know; I had seen some DOI-related Jira issues come through but 
I'll make sure to review them in more detail. Yes, we'll be using 
DataCite; luckily with this particular repository, we're not really 
expecting metadata changes once the submission is completed.

cheers,
Andrea

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IRR Technical Specialist, ITS Information Systems
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Re: [Dspace-tech] Nested Metadata

2015-07-29 Thread Andrea Schweer
Hi,

On 30/07/15 08:06, Peter Dietz wrote:
 Has anyone stored nested / rich metadata in DSpace?

In a freshwater quality data repository I've helped develop 
(http://lernzdb.its.waikato.ac.nz), we're storing rich metadata in an 
XML bitstream. This bitstream is considered the authoritative source for 
the metadata. The DSpace item metadata fields are just used as a vehicle 
for transporting the metadata into discovery and the DSpace item page. 
Some of the information on the item page is pulled straight from the XML 
file (the repository uses XMLUI and the XSL just makes a document() call 
to read the XML metadata just like it makes a document() call to read 
the standard mets.xml file). It works pretty well, you just need to make 
sure you keep everything in sync (we use a bunch of curation tasks for 
this).

cheers,
Andrea

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Re: [Dspace-tech] 'admin use only' fields in input-forms.xml

2015-07-29 Thread Andrea Schweer

  
  
On 29/07/15 18:30, Claudia Jürgen wrote:

  this configurable for each field in the input forms see
https://wiki.duraspace.org/display/DSDOC3x/Submission+User+Interface

You can add an element visibility to each field which is either set to
submit - visible only during submission
workflow - visible only during workflow


Huh I had no idea -- thanks Claudia!

I see you can even set the field to read-only in the other scope: visibility
  otherwise="readonly"workflow/visibility

cheers,
Andrea

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+64-7-837 9120
  


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Re: [Dspace-tech] 'admin use only' fields in input-forms.xml

2015-07-28 Thread Andrea Schweer

  
  
Hi Deborah,

On 29/07/15 13:11, Fitchett, Deborah
  wrote:


  
  
  
  Does anyone know if there’s a way to
create a field in input-forms.xml that can be seen/edited by
reviewers when the item is in the workflow, but isn’t seen by
the original submitter? Eg for internal processing notes about
how we’ve dealt with an embargo/withdrawal request etc.
 
(We’re on DSpace 3.1 XMLUI, but will
  upgrade to 5 probably next year.)

  


I don't think the behaviour you describe is possible out of the box,
but I'd be happy to be proven wrong on this.

cheers,
Andrea

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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] stats-util error Document is missing mandatory uniqueKey field: uid

2015-07-23 Thread Andrea Schweer

  
  
Hi Anthony,

oh right sorry, I should have looked at the help for -r: "While indexing the bundle
  names remove the statistics about deleted bitstreams". So
yes, it looks like an upgrade is your best bet. 

Alternatively, you could write a curation task / script that goes
through all bitstream IDs in your statistics solr core and for each
one, checks whether it's still a valid bitstream. If not, delete all
hits for this bitstream by sending the appropriate solr query.
Sorry, I don't have time right now to dig up examples for these
queries, but if you're interested in going down that route and need
help with the queries, post to the mailing list again and I'm sure
someone will respond.

cheers,
Andrea

On 24/07/15 03:41, Anthony Petryk
  wrote:


  
  
  
  
Hi again
Andrea,
 
As you
predicted, I now get a “version conflict” error after
applying your uid fix and rebuilding:
 
Exception:
version conflict for " expected=1507325787224670208
actual=1507501635509682176
org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException:
version conflict for " expected=1507325787224670208
actual=1507501635509682176
 
So it looks
like we’ll need to upgrade to 5 for the full solution.
 
Cheers,
 
Anthony
 

  
From: Anthony Petryk
[mailto:anthony.pet...@uottawa.ca]

Sent: Thursday, July 23, 2015 11:22 AM
        To: Andrea Schweer schw...@waikato.ac.nz;
dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] stats-util error
"Document is missing mandatory uniqueKey field: uid"
  

 
Thanks for the
response, Andrea. 

 
Do I need to do
anything after updating the solrconfig.xml file, as you
suggested?
 
I tried running
but stats-util with just the –r flag, but it doesn’t work. 
I confirmed this by looking at StatisticsClient.java, which
only uses r if b is present:
 
  else
if(line.hasOption('b'))
    {
   
SolrLogger.reindexBitstreamHits(line.hasOption('r'));
    }
 
Best,
 
Anthony
 

  
    From: Andrea Schweer [mailto:schw...@waikato.ac.nz]

Sent: Wednesday, July 22, 2015 5:32 PM
To: Anthony Petryk anthony.pet...@uottawa.ca;
dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] stats-util error
"Document is missing mandatory uniqueKey field: uid"
  

 
Hi Anthony,

  On 23/07/15 01:37, Anthony Petryk wrote:


  DSpace 4.3. 
   We’re getting an error when trying to run
  dspace stats-util –br: “Document is missing
  mandatory uniqueKey field: uid”.  We want to run this
  command specifically to remove stats for deleted
  bitstreams (-r option).
  
   
  This sounds like the same root problem as

  DS-2212, which is fixed in version 5.2.  But I just
wanted to check: is there any way to get this to work
without upgrading?


You're actually running into 
  https://jira.duraspace.org/browse/DS-2489. If I
remember correctly then you may be able to fix this by
applying this small change to the solrconfig.xml for the
statistics core:
https://github.com/DSpace/DSpace/commit/b07707874a489b4d5238c87d04d2be1b28ece447

However, chances are that you'll then just run into further
issues such as DS-2212.

If you're only after removing deleted bitstreams, try
leaving out the "b" flag ("Reindex the bitstreams to ensure
we have the bundle name"). Re-indexing will hit the uid bug
(and probably the _version_ one too); deleting (-r only)
shouldn't have the same issue since it won't try adding
documents to the solr index.

cheers,
Andrea
    

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Re: [Dspace-tech] dspace 5.1 error You are not authorized to submit to any collections

2015-07-22 Thread Andrea Schweer
Hi Kostas,

On 22/07/15 20:42, Konstantinos Koumoutsos wrote:
 I am experiencing a problem after logging in and while starting a new 
 submission under My dspace.
 I got the error You are not authorized to submit to any collections 
 via gui. The weird thing is that, if i browse to any specific 
 collection i have the option to submit a new item. That means that 
 there is no issue with the permission of each collection etc.

That sounds like https://jira.duraspace.org/browse/DS-2556
If you're using the special group functionality (group membership 
defined via single sign on property), try setting
org.dspace.content.Collection.findAuthorizedPerformanceOptimize=false

cheers,
Andrea

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Re: [Dspace-tech] stats-util error Document is missing mandatory uniqueKey field: uid

2015-07-22 Thread Andrea Schweer

  
  
Hi Anthony,

On 23/07/15 01:37, Anthony Petryk
  wrote:


  
  
  
  DSpace 4.3.   We’re getting an error
when trying to run dspace stats-util –br: “Document is
missing mandatory uniqueKey field: uid”.  We want to run this
command specifically to remove stats for deleted bitstreams (-r
option).
 
This sounds like the same root problem as 
DS-2212, which is fixed in version 5.2.  But I just
  wanted to check: is there any way to get this to work without
  upgrading?
  


You're actually running into
https://jira.duraspace.org/browse/DS-2489. If I remember correctly
then you may be able to fix this by applying this small change to
the solrconfig.xml for the statistics core:
https://github.com/DSpace/DSpace/commit/b07707874a489b4d5238c87d04d2be1b28ece447

However, chances are that you'll then just run into further issues
such as DS-2212.

If you're only after removing deleted bitstreams, try leaving out
the "b" flag ("Reindex the bitstreams to ensure we have the bundle
name"). Re-indexing will hit the uid bug (and probably the _version_
one too); deleting (-r only) shouldn't have the same issue since it
won't try adding documents to the solr index.

cheers,
Andrea
    
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Re: [Dspace-tech] New submissions are not searchable

2015-06-22 Thread Andrea Schweer

  
  
Hi,

On 23/06/15 03:58, Murray, Gregory
  wrote:


  
  Thank you very much for this information. It's extremely helpful.
  I must say I'm very surprised that DSpace doesn't provide
  full-text searching by default -- only by setting up a cron job or
  by running the indexing manually. Searching the full text of
  text-based file formats should be the default behavior out of the
  box, not a specialized or atypical use case.


The short answer is, I'm sure there were good reasons for this
behaviour back when it was first implemented, and it has never been
enough of a problem for someone to submit a pull request or file a
bug report. For the record, I do agree with you that it would be
great not to have to set up additional things to support fulltext
search. On the other hand, the cron job gives you the flexibility to
schedule the fulltext extraction whenever it suits you, since this
may be a resource intense task (probably more of a problem 10 years
ago than it is now -- hence our drive to look at the use cases for
the modern repository).


  As regards running the dspace script with sudo, now that I've
done it once, is there a way for me to determine whether I've
messed up the file system permissions?
  


You could run a recursive chown (chown -R tomcat:tomcat or whatever
your user/group are) on the dspace directory to fix its permissions.
If you also throw in a -c, chown will tell you about all changes it
makes. Note though that chown won't follow symbolic links. So if
your dspace directory contains symbolic links, you'll have to run
chown on the targets of these links too.

cheers,
Andrea

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Re: [Dspace-tech] New submissions are not searchable

2015-06-21 Thread Andrea Schweer

  
  
Hi,

On 20/06/15 06:03, Murray, Gregory
  wrote:


  
  From the DSpace bin directory I ran "sudo ./dspace
index-discovery" but it had no effect on the problem. I don't
see anything in the documentation to indicate that full-text
indexing has to be enabled with a config change. Surely it's
enabled by default, right?


Fulltext extraction needs to be scheduled via cron, see
https://wiki.duraspace.org/display/DSDOC5x/Scheduled+Tasks+via+Cron
-- you need the media filter task. This task extracts the full text
and it also generates thumbnails. That's what Hilton was referring
to. Unfortunately, full-text extraction doesn't happen
automatically, you do need to run the media filter. The media filter
will trigger a re-index of the item once the .pdf.txt file has been
generated, and from then on you can do fulltext searches on that
item.

You may be aware that we're currently collecting use cases for
DSpace. Automatically running the media filter when an item is
ingested is mentioned in the Tim's comment on this use case:
https://wiki.duraspace.org/display/DSPACE/Admin+UI+-+Run+media+filters
-- if you think this would be useful, you may wish to "like" Tim's
comment and/or leave a comment of your own on the use case.

Finally, unless you're running DSpace as root, you should never ever
run a dspace command with just sudo. This can thoroughly mess up the
file system permissions. All dspace commands need to be run as the
same user that Tomcat runs under (the user is "dspace" if you
followed the DSpace installation instructions, but it could be
"tomcat" or something else depending on your OS/distribution).

cheers,
    Andrea

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Re: [Dspace-tech] citation_pdf_url

2015-06-04 Thread Andrea Schweer
Hi,

On 05/06/15 01:17, nicolasschwab wrote:
 I am using DSpace 5 and i already read the ticket you mentioned, and i found
 that when an item has more than one bitstream but no primary and all of them
 are public the citation_pdf_url will be null.

 I have been checking the code and i found a solution, if you want i could
 make a ticket and a pull request so can check it

Whoops I guess the new logic missed a case then, sorry about that! Yes 
please, a ticket and PR would be fab.

cheers,
Andrea

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Re: [Dspace-tech] Adding browse by Type in Dspace discovery side menu

2015-05-28 Thread Andrea Schweer

  
  
Hi,

On 28/05/15 18:05,
  allybit...@udsm.ac.tz wrote:


  I am trying to add search by Type eg Book or Book chapters in the
Discovery menu side bar.



There is documentation here:
https://wiki.duraspace.org/display/DSDOC5x/Configuration+Reference#ConfigurationReference-BrowseIndexConfiguration
(scroll down to "Defining the Indexes").

Essentially, in your dspace.cfg file there will be a block like
this:


  webui.browse.index.1 =
  dateissued:metadata:dc.date.issued:date:full
  webui.browse.index.2 =
  author:metadata:dc.contributor.*:text
  webui.browse.index.3 =
  title:metadata:dc.title:title:full
  webui.browse.index.4 =
  subject:metadata:dc.subject.*:text
  #webui.browse.index.5 =
  dateaccessioned:item:dateaccessioned
  
You'll need to add a
line, continuing the numbering without counting commented-out
lines, eg (assuming your type metadata is in dc.type):

webui.browse.index.1 =
dateissued:metadata:dc.date.issued:date:full
webui.browse.index.2 =
author:metadata:dc.contributor.*:text
webui.browse.index.3 =
title:metadata:dc.title:title:full
webui.browse.index.4 =
subject:metadata:dc.subject.*:text
webui.browse.index.5 =
  type:metadata:dc.type:text

You will most likely need to add some translations to your
Messages.properties (if using JSPUI) or messages.xml (if using
XMLUI) file, see
https://wiki.duraspace.org/display/DSDOC5x/Localization+L10n for
help.



You will also need to re-index Discovery to get the type browse to
work.

cheers,
Andrea
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Re: [Dspace-tech] Odd Characters in Search Results...

2015-05-28 Thread Andrea Schweer
Hi,

On 28/05/15 17:21, euler wrote:
 Thanks for the link. I forgot to mention that I am using Windows 2003 as my
 OS, so I'm not using crontab, instead I have a batch file that is executed
 by Scheduled Tasks. Apologies for my ignorance, but I don't know how to
 apply this to a Windows environment.

I have no idea either, but perhaps (hopefully) someone else on this list 
can help!

cheers,
Andrea

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Re: [Dspace-tech] handle server

2015-05-27 Thread Andrea Schweer
Hi,

On 27 May 2015 at 19:20, Sean Carte sean.ca...@gmail.com wrote:


 On 26 May 2015 at 23:44, Andrea Schweer schw...@waikato.ac.nz wrote:

 I use
 sudo jps -l
 (jps is like ps but just for JVM processes; the -l option tells it to
 output the full class name incl package)

 On one of my production DSpace servers, that currently says:
 13042 sun.tools.jps.Jps
 1768 org.apache.catalina.startup.Bootstrap
 1978 net.handle.server.Main

 So the first one is jps itself, the second one is tomcat and the third
 one is the handle service. A few greps less ;)


 Thanks, Andrea, unfortunately my servers produce output like this:

 ~# jps -lv
 1867 -- process information unavailable
 6514 sun.tools.jps.Jps
 -Dapplication.home=/usr/lib/jvm/java-7-openjdk-amd64 -Xms8m
 1636 -- process information unavailable

 I'm guessing that's because I'm using the OpenJDK?


No, my guess it that you aren't running jps as root. It only shows
information for the processes owned by the current user.


 Anyway,

 ps -ef | grep java | grep handle | grep -v 'grep'

 gets me the PID I need, so I'll just continue grepping excessively!


Sure thing, I just thought I'd mention the jps method in case it's useful
for someone!

cheers,
Andrea

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Re: [Dspace-tech] Odd Characters in Search Results...

2015-05-27 Thread Andrea Schweer
Hi,

On 28/05/15 15:24, euler wrote:
 Thanks for this. I just assumed that the original characters in my pdfs were
 defective somehow (some are defective actually, not OCRed but digital born
 documents). I would be glad to know how to make sure that the dspace
 media-filter will use the correct locale and UTF-8 encoding? I may have
 missed something in the documentation on how to set this.

Well -- how are you running the media filter? If you're running it from 
a crontab on linux, try the line I put into my other reply. Or eg 
http://www.logikdev.com/2010/02/02/locale-settings-for-your-cron-job/

cheers,
Andrea

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Re: [Dspace-tech] Odd Characters in Search Results...

2015-05-27 Thread Andrea Schweer
Hi,

On 28/05/15 14:44, euler wrote:
 I'm having this issues also. I resolved this by adding TEXT in dspace.cfg,
 ie xmlui.bundle.upload = ORIGINAL, TEXT, METADATA, THUMBNAIL, LICENSE,
 CC-LICENSE so that I can upload TEXT bundle aside from the ORIGINAL which is
 pdf. I just made sure that the text file was saved in UTF-8 encoding. The
 question marks that you're seeing are the extracted text made by dspace
 media-filter. By uploading a text version and deleting the extracted text,
 the question marks in search results went away.

If that solved the problem for you then my suspicion is that your media 
filter runs with the wrong locale. You need to make sure that the media 
filter is using UTF-8. I have
LANG=en_NZ.UTF-8
at the top of tomcat's crontab for that reason (you presumably want 
something other than en_NZ).

cheers,
Andrea

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Re: [Dspace-tech] access restriction by date

2015-05-26 Thread Andrea Schweer
Hi,

On 27/05/15 08:27, Jose Blanco wrote:
 I'm wondering how the access restriction by date works.  For example, 
 I have a file from an item that I want to restrict to a particular 
 group for a period of time.  So if I go to the edit bitstream policy 
 page, there is something there for the start and end date.  I imagine 
 that this is the start and end date of the restriction, no?  How is 
 the restriction lifted and changed to Anonymous access after the end 
 date?  Is there something that has to be run to lift the restriction?

Restrictions aren't lifted as such. Everything is controlled by the 
start/end dates. No (currently applicable) policy = admin-only access.

In your scenario of restricting to a particular group for a period of 
time, you will need two READ policies. One for the particular group, 
with no end date (since you don't want people in that group to _stop_ 
having access on that date), and one for Anonymous, with a start date 
from when you want to allow public access.

cheers,
Andrea

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Re: [Dspace-tech] handle server

2015-05-26 Thread Andrea Schweer

  
  
Hi,

On 27/05/15 02:53, Sean Carte wrote:


  

  On 26 May 2015 at 16:20, Hilton
Gibson hilton.gib...@gmail.com
wrote:

  
  
  Perhaps
this will help: http://wiki.lib.sun.ac.za/index.php/SUNScholar/Handle_Server
  
  
  The
handle server is always problematic after an upgrade.

  
  

Thanks, Hilton; lots of great
  information there.
  

So it seems that this is not a good
  indicator of whether handled is running:


  ps -ef | grep java | grep log4j-handle | grep -v 'grep'

  


I use
sudo jps -l
(jps is like ps but just for JVM processes; the -l option tells it
to output the full class name incl package)

On one of my production DSpace servers, that currently says:
13042 sun.tools.jps.Jps
1768 org.apache.catalina.startup.Bootstrap
1978 net.handle.server.Main

So the first one is jps itself, the second one is tomcat and the
third one is the handle service. A few greps less ;)

cheers,
Andrea
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[Dspace-tech] DSpace solr cache sizes

2015-05-26 Thread Andrea Schweer
Hi all,

I've been having two of my repositories run out of memory lately, 
after upgrading them to DSpace 5. Analysing the heap dumps show that the 
documentCache for the Discovery solr index is 700+MB -- its size is set 
to 512 (=512 solr documents) and each solr document contains the 
extracted fulltext twice (in fulltext and fulltext_hl). Since both 
repositories contain quite a few theses, some fulltext files are around 
3MB each. So no surprise about the size really.

Has anyone here run into similar issues / reduced the documentCache size 
/ found other ways to resolve this?

cheers,
Andrea

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Re: [Dspace-tech] Could not find the main class: org.dspace.storage.rdbms.DatabaseUtils. Program will exit.

2015-05-17 Thread Andrea Schweer
Hi,

On 16/05/15 05:07, Vimal Kumar V. wrote:
 Dear Friends,
 I got following error in the final step of Dspace installation.
 You got such errors before?
 root@user1:/build/dspace-5.1-src-release/dspace/target/dspace-installer# 
 sudo ant fresh_install

 Unable to locate tools.jar. Expected to find it in 
 /usr/lib/jvm/java-6-openjdk-amd64/lib/tools.jar
 Buildfile: 
 /build/dspace-5.1-src-release/dspace/target/dspace-installer/build.xml

 init_installation:

 init_configs:
  [copy] Copying 41 files to /dspace/config
  [copy] Copying 1 file to /dspace/config

 test_database:
  [java] Exception in thread main 
 java.lang.UnsupportedClassVersionError: 
 org/dspace/storage/rdbms/DatabaseUtils : Unsupported major.minor 
 version 51.0

That looks to me like you are running a JRE, not a JDK, and of a too old 
Java version. DSpace 5.x needs a JDK of Java 7 or newer: 
https://wiki.duraspace.org/display/DSDOC5x/Installing+DSpace#InstallingDSpace-OracleJavaJDK7orOpenJDK7

cheers,
Andrae

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Re: [Dspace-tech] Help for dspace backup/restore

2015-05-14 Thread Andrea Schweer

  
  
Hi,

you probably just need to reindex for discovery
[dspace]/bin/dspace index-discovery -bo

cheers,
Andrea

On 14/05/15 19:14, Emmanuel Wilson
  wrote:


  hello all.using database + assetstore restore
method



  i tried this.pg_dump/psql
  backup:
  pg_dump -U username -f backup.sql database_name
  restore:
  psql -d database_name -f backup.sql
  
it works something like
  import.alter table, create table etc.
i restarted tomcat.but only
  communities are camewhen i enter in to it no records
  found. i already copied the assetstore at /home/dspace/
  

  
  
  
  
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Re: [Dspace-tech] Location of files

2015-05-13 Thread Andrea Schweer
Hi,

On 13 May 2015 at 19:43, Vimal Kumar V. vimal0...@gmail.com wrote:


 Where files are downloding when we execute following command?
 I mean to which directory.

 cd /build/dspace-4.1-src-release
 mvn -U package


By default, ~/.m2/repository on Linux or C:\Documents and
Settings\{your-username}\.m2 on Windows. See
http://maven.apache.org/run-maven/index.html and the two pages linked from
the Configuring Maven section.

cheers,
Andrea

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Re: [Dspace-tech] access to page spins

2015-05-13 Thread Andrea Schweer
Hi,

On 14/05/15 05:24, Jose Blanco wrote:
 Thanks Tim, What seems to stopping the indexing is that when it 
 encounters an item that has rights other than Anonymous, it fails.  I 
 have confirmed this by editing an item it was failing on and making 
 all its access rights anonymous and then it went on till it found 
 another with non Anonymous rights.  I found this out restarting tomcat 
 and then going to the home page.  I have not run the manual index, but 
 will try that now and see what kind of error it spits out.

You mentioned you have some customisations in your code. Do any of them 
touch access permissions at all? I've had some problems similar to what 
you describe with customisations that used a fresh context and mixed 
calls to AuthorizeManager methods with the resource policy type in the 
parameter list and those without. I believe these two types of methods 
treat item.update calls differently and this can lead to database race 
conditions. If I remember correctly, I resolved this by using the 
existing context whenever possible and not mixing these two types of 
methods otherwise. I can't remember whether there was anything useful in 
the database logs when I encountered this issue.

cheers,
Andrea

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Re: [Dspace-tech] Question about adding a Search Filter

2015-05-12 Thread Andrea Schweer

  
  
Glad I could help. Also, clearly you simply conducted an experiment
to verify that a reindex is indeed needed for this type of change ;)

cheers,
Andrea

On 13/05/15 01:46, George Stanley Kozak
  wrote:


  
  
  
  
Andrea and
Hilton:
 
Thank you. 
Sure enough, I forgot to re-index.  My problem is solved. 
This proves that there are no “stupid” questions (just
“stupid” programmers like me ;-) )
 
George Kozak
Digital Library Specialist
Cornell University Library Information
  Technologies (CUL-IT)
218 Olin Library
Cornell University
Ithaca, NY 14853
607-255-8924
 
 
 

  
From: Andrea Schweer
[mailto:schw...@waikato.ac.nz]

Sent: Monday, May 11, 2015 5:19 PM
To: George Stanley Kozak;
dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] Question about adding
a Search Filter
  

 
Hi George,

  On 12/05/15 08:16, George Stanley Kozak
wrote:


  I am using DSpace 5.1 with a Mirage 2
  theme.
  
   
  I recently added a new browse and search
filter based on  dc.type.   
   
  The browse for types works correctly. 
However, if I do a search and then add the advanced search
filter of “type”, I get no hits.
  For the search filter, I updated
dspace/config/spring/api/discovery.xml to add the Search
Filter for “type”.


Stupid question, but did you restart tomcat and do a reindex
for discovery after the change to discovery.xml? I think
both are needed for this type of change.

cheers,
Andrea



-- 
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] problems with dspace 5.1 migration - error on eperson-firstname and unable to create administrator fresh install

2015-05-12 Thread Andrea Schweer

  
  
Hi,

On 12/05/15 05:19, Searle, Shannon
  wrote:


  
  
  
  I have been working on an upgrade from
an older postgres db in 1.6 dspace to the latest install of
dspace 5.1.
I ran the upgrades, checked migrate and
  started up the tomcat server. All looked well at first, but
  then any attempt to update profiles or show users resulted in
  an exception.
 
I ran a maven clean package, then an ant
  fresh install.  After that I couldn’t even create an
  administrator:
  


Did you really run an ant fresh_install? You should only ever do
that the very first time you install DSpace. From then on, run ant
update. As helix84 wrote, ant update will try to auto-upgrade your
database schema; I assume fresh_install won't try to do that since
it assumes the database has no tables yet.

cheers,
Andrea

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Re: [Dspace-tech] How to add new metadata element ??

2015-05-11 Thread Andrea Schweer

  
  
Hi,

On 11/05/15 18:16, Emmanuel Wilson
  wrote:


  
i edit thiswebui.itemdisplay.default = dc.title,
  dc.title.alternative, dc.contributor.*, dc.Institution.University,
  \
  
  Didn't come

  


Please keep copying in the mailing list, someone else may be able to
help you better/faster.

You'll need to tell us a little bit more. Is that actually the name
of the metadata field you added (Including the capital letters)? Did
you do a rebuild as described on the page I linked to?

cheers,
Andrea

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Re: [Dspace-tech] Question about adding a Search Filter

2015-05-11 Thread Andrea Schweer

  
  
Hi George,

On 12/05/15 08:16, George Stanley Kozak
  wrote:


  
  
  
  I am using DSpace 5.1 with a Mirage 2
theme.
 
I recently added a new browse and search
  filter based on  dc.type.   
 
The browse for types works correctly. 
  However, if I do a search and then add the advanced search
  filter of “type”, I get no hits.
For the search filter, I updated
  dspace/config/spring/api/discovery.xml to add the Search
  Filter for “type”.
  


Stupid question, but did you restart tomcat and do a reindex for
discovery after the change to discovery.xml? I think both are needed
for this type of change.

cheers,
Andrea

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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] How to add new metadata element ??

2015-05-10 Thread Andrea Schweer
Hi,

On 11/05/15 17:15, Emmanuel Wilson wrote:
 by using metadata field directory, i tried to add new element as 
 'Instituion with its qualifier, scope note.

 i want to see it as a user from where i can download the pdf
 Eg: Title:
 Authors:
 'Institution':--this field not coming even i add this element.
 Keywords:

 How can i do this properly ??

You'll have to tell us a little bit more about your DSpace. Are you 
using JSPUI or XMLUI? If XMLUI, what theme? What DSpace version?

cheers,
Andrea

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Re: [Dspace-tech] How to add new metadata element ??

2015-05-10 Thread Andrea Schweer

  
  
Hi,

it's been a while since I last used JSPUI, but I'd start with the
instructions on this page:
https://wiki.duraspace.org/pages/viewpage.action?pageId=19006086

cheers,
Andrea

On 11/05/15 17:39, Emmanuel Wilson
  wrote:


  Ok.i am using dspace 3.1. Going to migrate 4.2.
Using JSPUI.


But meanwhile i want to add this new element..
  
  
On Mon, May 11, 2015 at 10:58 AM,
  Andrea Schweer schw...@waikato.ac.nz
  wrote:
  Hi,

  

On 11/05/15 17:15, Emmanuel Wilson wrote:

  by using metadata field directory, i tried to add new
  element as 'Instituion" with its qualifier, scope
  note.
  
  i want to see it as a user from where i can download
  the pdf
  Eg: Title:
  Authors:
  'Institution':--this field not coming even i add
  this element.
  Keywords:
  
  How can i do this properly ??


  

You'll have to tell us a little bit more about your DSpace.
Are you using JSPUI or XMLUI? If XMLUI, what theme? What
DSpace version?

cheers,
Andrea

-- 
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand

  





-- 

  

  Emmanuel
  Wilson
macheml.wordpress.com
joomlaarchives.wordpress.com

  

  

  


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Re: [Dspace-tech] DSpace 5.1 oai

2015-05-10 Thread Andrea Schweer
Hi

On 30/04/15 00:17, Domingo Iglesias wrote:
 I have a test environment for dspace 5.1 running with solr and jspui, 
 but I cannot get oai interface running.
 When calling: http://diposittest.ub.edu/oai/request?verb=Identify
 I get an Error 500--Internal Server Error with followed by:

 java.lang.NoSuchMethodError: 
 org.apache.commons.io.FileUtils.write(Ljava/io/File;Ljava/lang/CharSequence;)V

That looks like you're using an older version of Java. DSpace 5.1 needs 
at least Java 7: 
https://wiki.duraspace.org/display/DSDOC5x/Installing+DSpace#InstallingDSpace-OracleJavaJDK7orOpenJDK7

cheers,
Andrea

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Re: [Dspace-tech] Creative Commons Question

2015-05-10 Thread Andrea Schweer

  
  
Hi George,

On 09/05/15 06:38, George Stanley Kozak wrote:

  
  
  
  I was asked recently why DSpace uses
Creative Commons 3.0 (https://creativecommons.org/licenses/by/3.0/)
instead of Creative Commons 4.0 (https://creativecommons.org/licenses/by/4.0/).

 
Can someone answer that?  And are there any
  plans to go to using Creative Commons 4.0?
  


This is related to CC's move away from ported licences and you can
influence this by changing your DSpace configuration. I'm assuming
you have a CC jurisdiction enabled in your dspace.cfg
(https://github.com/DSpace/DSpace/blob/dspace-5.1/dspace/config/dspace.cfg#L948).
That means DSpace will ask CC for the most recent licence version
for this jurisdiction that matches the other criteria given during
submission (whether to allow commercial reuse etc). CC 4 no longer
uses jurisdictions, so there is no CC 4 licence for the jurisdiction
you specify. Hence, you get a CC 3 licence for your jurisdiction.

Simply comment out the jurisdiction setting in dspace.cfg and you
will start getting (unported) CC 4 licences. 

cheers,
Andrea
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Re: [Dspace-tech] Embargoed items showing in recent submissions and collection browse pages

2015-05-07 Thread Andrea Schweer
Hi,

On 08/05/15 10:00, Terry Brady wrote:
 From my experience in DSpace 3, the browse indexes were not aware of 
 access rights.  All items appeared in browse. Restricted item did not 
 appear faceted (discovery) navigation for an unauthenticated user.

 This issue was resolved for me after upgrading to DSpace 4.

Thanks Terry -- we skipped DSpace 3 because of issues around embargoes 
(ie went straight from 1.8.x to 4.x), so I'm never too sure what the 
expected DSpace 3 behaviour is. Plus most of my repositories are quite 
heavily customised around embargoed/dark items anyway.

 Since the Demo site is running the current version of DSpace, I am 
 surprised that the embargo items are not being hidden.

That does sound strange. I don't have time to try this out, but I'd check
- that the embargoed items still show up in the recently added list when 
you aren't logged in -- this really shouldn't be the case if the 
authorisation policies are correct
- that the authorisation policy for the item doesn't allow READ for the 
Anonymous group -- I could imagine that either something went wrong with 
setting the permissions, or the permissions are restricting only the 
file but not the entire item.

cheers,
Andrea

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Re: [Dspace-tech] Embargoed items showing in recent submissions and collection browse pages

2015-05-07 Thread Andrea Schweer
Hi,

On 08/05/15 06:35, Alcides Carlos de Moraes Neto wrote:
 I manage a 3.2 dspace installation here. I configured it to use the 
 simple embargo form, and it works.
 But all the embargoed items show in the page listings, specifically, 
 recent submissions and collection browsing.

 I tested the embargo functionality on the dspace demo site, and the 
 items are shown there as well.

 Is there a way to hide them?

Do they show up even when you are not logged in? DSpace 3 uses access 
rights awareness 
(https://wiki.duraspace.org/display/DSDOC3x/Discovery#Discovery-Accessitembasedresults)
 
for this, so in theory you should only see the item in the recent 
submissions lists etc when you're logged in as a user who has READ 
permissions on the item.

cheers,
Andrea

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Re: [Dspace-tech] Restricted items published via XOAI

2015-05-06 Thread Andrea Schweer
Hi Germán,

what version of DSpace are you using? There is a bug around OAI filters in
DSpace 5.0 and 5.1: https://jira.duraspace.org/browse/DS-2424

cheers,
Andrea

On 7 May 2015 at 02:49, Germán Biozzoli germanbiozz...@gmail.com wrote:

 Hi people

 I have few items restricted to a group of users in a collection. The
 restriction works OK for Discovery search and browse, but not in the
 context of OAI data provider. I've checked that the request context has the
 defaultFilter

 Contexts
 Context baseurl=request name=Default Context
 !-- Restrict access to hidden items by default --
 Filter ref=defaultFilter /

   ...

 That uses DSpaceAuthorizationFilter. As far as I can see the items have
 restriction for all bitstreams and item for READ to the group.

 Any idea?

 Thanks  regards
 Germán




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Re: [Dspace-tech] Error when browse Title, Author, Issue Date in Communities or Collections

2015-05-04 Thread Andrea Schweer

  
  
Hi,

On 05/05/15 14:10, Nguyen Hung Thanh
  wrote:


  
I install DSpace 5.1 on windows, using jspui.
  
  When I browse DSpace via Title, Author, Issue Date in
  Communities or Collections,
  DSpace show all item in DSpace instead show item in this
  Communities/Collections

  


This is a known bug in DSpace 5.1:
https://jira.duraspace.org/browse/DS-2482
It will be fixed in DSpace 5.2, which will hopefully be released in
the next few weeks. 

If you can't wait for DSpace 5.2, you could try applying the
original bugfix to your code base:
https://github.com/DSpace/DSpace/pull/876/files

cheers,
Andrea

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Re: [Dspace-tech] Hiding sub-communities from main page

2015-05-03 Thread Andrea Schweer
Hi,

On 02/05/15 13:45, Ilana Kingsley wrote:
 I've just inherited a dspace project and know nothing about the software.

You've found the right place to ask questions :) Also, the official 
documentation is here: 
https://wiki.duraspace.org/display/DSDOC/All+Documentation

 I've been told there's no admin interface via the web-- which I find 
 hard to believe, and all changes need to be done command line.

That's not entirely true, but what you are asking about cannot be done 
via the admin interface.

 I'm wondering if someone can tell me how to hide sub-communities from 
 the community page.
 On https://scholarworks.alaska.edu/community-list if you click one of 
 the communities (example, UAF) we want to hide the third sub-community 
 on the list.

 Does anyone know how to do this?

 Note, it don't even know what version of dspace we are running or how 
 to tell what version we're running.

According to the Generator meta tag, you're running DSpace 3.1 
https://wiki.duraspace.org/display/DSDOC3x/DSpace+3.x+Documentation
Looking at the resources pulled in to the pages (css / JavaScript), 
you're using XMLUI with a theme based on Mirage 
https://wiki.duraspace.org/display/DSDOC3x/Mirage+Configuration+and+Customization

The community page looks nothing like a standard Mirage community page, 
so this must have been customised quite extensively. You'll probably 
want to try and find those customisations and see whether you can hide 
the communities you want to hide.

There is embedded JavaScript code on the community list page. It looks 
like this is generated in this xsl file: 
https://scholarworks.alaska.edu/themes/Mirage/lib/xsl/core/page-structure.xsl 
-- so you'll want to change that file. Find where the source code for 
your DSpace instance lives and figure out where the page-structure.xsl 
file is. It should be either under a dspace/modules directory tree or 
a dspace-xmlui/src/main/webapp tree -- for comparison, here is the 
standard 3.1 source tree: https://github.com/DSpace/DSpace/tree/dspace-3.1
Then you will probably need to rebuild DSpace to deploy the changes -- 
or you may be able to get away with just copying the page-structure.xsl 
file across. You may wish to try this whole process on a test instance 
if there is one; depending on how changes to the code and configuration 
have been managed, doing a rebuild may remove functionality.

cheers,
Andrea

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Re: [Dspace-tech] Building DSpace after bug fix (DS-2542)

2015-05-03 Thread Andrea Schweer

  
  
Hi Margaret,

On 02/05/15 01:48, Margaret Vail wrote:


  
  
  
  I am trying to apply the suggested bug
fix for DS-2542 (https://jira.duraspace.org/browse/DS-2542)
to my DSpace 5.1 instance. However, the changes are not
displaying. Can someone please log through my build process and
advise on any mistakes or anything I may be missing.
 
Update lyncode/xoai:
 
git clone
  https://github.com/lyncode/xoai.git
git checkout 3.x
(The bug fix was already accepted in this
  version of the code, so I did not need to apply it)
cd to lyncode/xoai root directory
mvn package
(Jar file built in target directory)
(I de-compiled the jar file and was able to
  confirm that the bug fix was included in the jar)
  


Run 
mvn package install 
that will install the jar file into your local maven cache, by
default ~/.m2/repository


  Apply code changes in 
  https://github.com/DSpace/DSpace/pull/912 to source code
  cd [dspace-src]/dspace
  mvn clean package
  cd target/dspace-installer
  ant update_code  

You still need to tell DSpace to use your updated jar file -- there
are two options. You can do this "properly", by changing the XOAI
version in the DSpace pom file. Or you can do the rebuild as always
and just swap in the updated jar file later.

First option

In the DSpace codebase ([dspace-src]/dspace-oai/pom.xml) change the
OAI version to 3.2.10-SNAPSHOT -- this is exactly what's in the
pom.xml file in the lyncode xoai project you just compiled.
("SNAPSHOT" means that this isn't an officially released version)
Since you are changing something in a [dspace-src]/dspace-*
directory, you will need to do the full rebuild option
cd [dspace-src]   - not [dspace-src]/dspace
mvn clean package
ant as in your description (I always use the update ant target; I'm
not sure whether update_code is enough, I think you'd need
update_webapps too
Then you should see the xoai-3.2.10-SNAPSHOT.jar in
[dspace]/webapps/oai/WEB-INF/lib/ and in [dspace]/lib (and you
should _not_ see xoai-3.2.9.jar in those directories)

Second option

Don't make the pom change, just do your normal rebuild (mvnant)
Then delete [dspace]/webapps/oai/WEB-INF/lib/xoai-3.2.9.jar and
instead copy over the xoai you built yourself
(xoai-3.2.10-SNAPSHOT.jar)
Then delete [dspace]/lib/xoai-3.2.9.jar and instead copy over the
xoai you built yourself

I hope this helps.

cheers,
Andrea
    
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Re: [Dspace-tech] Open Search

2015-05-03 Thread Andrea Schweer

  
  
Hi Gary,

On 04/05/15 16:37, Gary Browne wrote:


  
  I'm trying to get open search
working. I have enabled it and restarted tomcat. If I send a
search like:

http://ses-dev.library.usyd.edu.au/open-search/?q=test
  


Looks like this needs to be query=test (and you don't strictly
speaking need the trailing slash, though it shouldn't cause any
problems either)
https://github.com/DSpace/DSpace/blob/dspace-4.1/dspace-jspui/src/main/java/org/dspace/app/webui/discovery/DiscoverUtility.java#L190

Does this work? http://ses-dev.library.usyd.edu.au/open-search/?query=test

cheers,
Andrea
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Re: [Dspace-tech] Moving a community

2015-04-28 Thread Andrea Schweer

  
  
Hi Mary,

On 29/04/15 12:15, Mary Weppler-Selear
  wrote:


  
  I want to move a community within a hierarchy, and I’m wondering
  if anyone has information as to whether it’s best to use the community
filiator  for doing this?  I’m using 4.x currently.  In this
  instance I need to move a sub community and its corresponding
  collections and items further down the hierarchy and within
  another parent sub community.  If anyone has had success doing
  this and can share their experience that would be helpful.  

This sounds like the exact use case for the community filiator. It's
been a long time since I last used that tool, but there are no open
bug reports for it, so why don't you give it a go and let us know
what happens :) (You might like to do this on a test instance first
if you have one, and/or back up your database first.)

cheers,
Andrea
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Re: [Dspace-tech] Advanced Embargo: Dark Metadata

2015-04-21 Thread Andrea Schweer
Hi,

On 22/04/15 02:49, Tim Donohue wrote:
 You should be able to just enable that Access Step. Setting the embargo
 via that step applies to the entire Item (including metadata), if I
 recall correctly. By default, if you use the Simple version, it'll
 limit Anonymous READ access (on the Item) so that it starts on the date
 the embargo ends. If you use the Advanced version, you can specify
 exact groups whose READ access should be limited (just be sure to click
 the Confirm Policy  add another for each embargo policy).

This is what we're doing for some of my repositories; however I also 
have a pile of customisations in place (since at least DSpace 1.6.x) to 
make sure the policies are respected everywhere. I don't know whether 
all of these customisations are still needed, perhaps some are overkill. 
I should review these at some point.

With the Discovery rights awareness functionality, you (=the current 
user) will see an item in search/browse etc only when you have READ 
permissions for the item. Viewing the item page is also controlled by 
the item's READ permission; if you don't have that permission then 
you'll get a message / be prompted to log in. So the READ permissions 
definitely cover the basics.

cheers,
Andrea

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Re: [Dspace-tech] Constant dspace error java.lang.OutOfMemoryError: Java heap space

2015-04-21 Thread Andrea Schweer
Hi Евгений,

as I said on Stack Overflow, your tomcat log file suggests that it isn't 
actually using those JAVA_OPTS

http://stackoverflow.com/questions/29778609/constant-dspace-error-java-lang-outofmemoryerror-java-heap-space

cheers,
Andrea

On 22/04/15 05:02, Евгений wrote:
 Hello all, I have a DSpace server, after uprading from version 4.3 to
 5.1, it constantly stops working after some hours with following error:

 java.lang.OutOfMemoryError: Java heap space

 I've read answers to the same questions, but they didn't help me.
 My JAVA_OPTS: -Xmx4096M -Xms4096M -Dfile.encoding=UTF-8
 -Dsun.jnu.encoding=UTF-8

 Here are dspace.log.2015-04-21
 http://jpst.it/ylU4

 tomcat7-stderr.2015-04-20.log
 http://jpst.it/ylTN

 and localhost_access_log.2015-04-20.txt
 http://jpst.it/ylTT

 I searched the internet for a solution and could not find one, does any
 one have a clue?

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Re: [Dspace-tech] pdf is not displaying

2015-04-19 Thread Andrea Schweer
Hi Ritesh,

On 17/04/15 18:53, ritesh roushan wrote:
 when I click on item list, pdf is just downloading. I want it to 
 display. how can I do this?

The behaviour depends on the file size -- have a look at this dspace.cfg 
setting here: 
https://github.com/DSpace/DSpace/blob/dspace-5.1/dspace/config/dspace.cfg#L1523

However, DSpace only sends a hint to the browser and each browser 
interprets this differently. So you cannot reliably force all browsers 
to have the same behaviour around this. See eg 
http://stackoverflow.com/questions/1395151/content-dispositionwhat-are-the-differences-between-inline-and-attachment
 
for some more information.

cheers,
Andrea

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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-04-01 Thread Andrea Schweer

  
  
Hi,

On 02/04/15 12:50, George Stanley Kozak
  wrote:


  
  
  
​Andrea:



I'm not sure if
  you saw my follow up post.  Yes, I did see errors in the Solr
  log.  It is:


  ERROR org.apache.solr.core.CoreContainer @ Unable to create
  core: statistics

  Format version is not supported (resource: segment _32 in
  resource
  ChecksumIndexInput(MMapIndexInput(path="/cul/app/dspace/solr/statistics/data/index/segments_1p0"))):
  2.x. This version of Lucene only supports indexes created with
  release 3.0 and later.

   

  If I later try to upgrade to 5.1, I see during the ant update:

  /cul/app/dspace/src/dspace-5.1-src-release/dspace/target/dspace-installer/build.xml:1061:
  ERROR occurred while checking Solr index version:

  Exception in thread "main" java.io.IOException: Could not read
  Lucene segments files in
  /cul/app/dspace/solr/statistics/data/index

  


No sorry, I didn't see that. I did however run into a very similar
problem with one of my own DSpace 5.1 development instances the
other day. I'm not quite sure what state the solr indexes were in at
that stage, so I'm not sure how to reproduce it. It does look like
we should add a big warning to the upgrade instructions for people
to back up their solr index first -- my problem went away when I
re-set the usage stats data dir in my dev instance to a fresh copy
from (4.2) production.


  

  I did try to manually update the Solr statistics using the
  instructions in the DSpace 5.1 Manual, but that didn't seem to
  help..
  


My suspicion is that once the upgrade fails halfway through for some
reason, there is no way to recover from the situation. Hence the
importance of the back-up!


  

  Is there a way to tell the DSpace that we don't want to use
  the Solr Stats?  We have our own statistics gathering so I'm
  really not using them.
  


It looks like you can disable adding new hits to the Solr statistics
by commenting out the SolrLoggerUsageEventListener bean in
dspace-xmlui/src/main/webapp/WEB-INF/spring/applicationContext.xml
(XMLUI) /
dspace-jspui/src/main/webapp/WEB-INF/spring//applicationContext.xml
(JSPUI). Then you could delete the contents of
[dspace]/solr/statistics/data (for anyone following along on this --
this _will_ wipe all your usage stats data! Do this only when you're
sure that's what you want!) and that should be it. But I've never
tried this, so it may break lots of things in lots of interesting
ways.

cheers,
    Andrea
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Javascript disabled on DSpace?

2015-04-01 Thread Andrea Schweer

  
  
Hi Susan,

what maven version are you using (mvn --version)? I just discovered
that Mirage 2 doesn't appear to work with Maven 3.3.1; Maven 3.2.5
is fine. https://jira.duraspace.org/browse/DS-2533

cheers,
Andrea

On 02/04/15 12:28, Borda, Susan wrote:


  
  I’m having this same issue:
  https://jira.duraspace.org/browse/DS-2368
  -susan
  


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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-04-01 Thread Andrea Schweer

  
  
Hi George,

On 02/04/15 04:22, George Stanley Kozak
  wrote:


  
  
  
  I found a
  problem in my upgrade from 3.3 to 4.3.
When I do
the optimize of the solr indexes, my optimize of core
“search” and “oai” work fine, but when I try to optimize
“statistics”, I get an internal server error:
wget
‘http://localhost:8080/solr/statistics/update?optimize=true’
results
  in
Connecting
to localhost|::1|:8080... connected.
HTTP
request sent, awaiting response... 500 Internal Server Error
 
Does anyone
have suggestions as to what I can do to fix this?  (By the
way, the 4.3 install seems to run OK even with this error).
  


Is there any more information about the 500 error? Maybe in the solr
log or in the tomcat log, either from the time you made the request
or when you started up tomcat?

cheers,
Andrea

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The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Javascript disabled on DSpace?

2015-03-31 Thread Andrea Schweer

  
  
Hi Susan,

(I'll add dspace-tech back in -- perhaps others with the same
problem can benefit from the discussion)

With the same message coming up in Chrome, to me it sounds like
you've probably run into one of the Mirage 2 build problems. Have a
look at the official DSpace documentation for a few hints:
https://wiki.duraspace.org/display/DSDOC5x/Mirage+2+Configuration+and+Customization#Mirage2ConfigurationandCustomization-ThebuildprocessandenablingMirage2

cheers,
Andrea

On 01/04/15 03:53, Borda, Susan wrote:


  
  Hi Andrea-
  Thanks for the info, I knew it was a long shot that that the
setting was in Dspace. I get the same message in Chrome. I will
re-run Maven to see if I can spot the error.
  
  
  Thanks again,
  susan
  
  
  
From:  Andrea Schweer schw...@waikato.ac.nz
  Date:  Monday, March
  30, 2015 at 6:02 PM
  To:  Susan Borda susan.bo...@montana.edu,
  "dspace-tech@lists.sourceforge.net"
  dspace-tech@lists.sourceforge.net
  Subject:  Re:
  [Dspace-tech] _javascript_ disabled on DSpace?




  
Hi Susan,

On 31/03/15 12:31, Borda, Susan
  wrote:


  I just installed Space 5.1 with Mirage 2 on a Centos 6.6
  VirtualBox. When I go to my new DSpace page
  (localhost:8080/xmlui) I’m getting a message that says
  “_javascript_ has been disabled for your browser. Some
  features of this site may not work without it.”
  
  
  _javascript_ is working on other sites just not this
one.
  
  
  Where do I enable _javascript_ for Dspace, is it in one
of the Mirage 2 or xmlui files?


This is not a DSpace setting, it's something in your
browser. It's a little bit odd for this to happen in what is
presumably pretty much a fresh Centos install. Can you try
with a different browser? Your VM has access to the
Internet, yes?

Did the maven step of the build process complain about
anything? Mirage 2 will sometimes tell you that the build
was successful even when it wasn't, so you'll need to keep
an eye on the output while maven is running.

If none of these things help, could you try to switch on the
developer tools for your browser, then force-reload the page
to see whether you get any error messages to pinpoint the
problem? In Firefox, you'll want to open the Web Console
(try Ctrl-Shift-K). In Chrome, it appears to be called
_javascript_ console (try Ctrl-Shift-J).

cheers,
Andrea

    -- 
Dr Andrea Schweer
IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  

  


    -- 
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
+64-7-837 9120
  


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Re: [Dspace-tech] Embargo problems DSpace 4.0

2015-03-30 Thread Andrea Schweer

  
  
Hi Antony,

On 31/03/15 02:28, Antony Corfield
  [awc] wrote:


  
  Hi Andrea, thanks for your reply and possible solution, I
  suspected this was the case. Are you aware of the new release of rioxx
metadata profile? I wonder if future DSpace releases will
  incorporate this with the advanced embargo functionality?

The RIOXX metadata guidelines document
(http://rioxx.net/guidelines/RIOXX_Metadata_Guidelines_v_3.0.pdf)
mentions this:

To  help  with  the  compliance  process, 
  a  plugin  for  EPrints  repositories  (versions  3.3.x)  and  an 
  add -­‐ on for  DSpace  repositories  (versions 3,  4  and  5)
  will  be  freely  available. The 
  RIOXX EPrints  plugin  is  currently  being  trialed  by  around 
  ten  early  adopters;  the  DSpace  plugin  will  be  developed 
  by  @Mire  and  is  scheduled  to  be  available  around  the 
  end  of  March 2015.

You might like to check with @mire whether this is still planned and
what distribution model they are planning for the plugin (eg paid
module vs potentially included in stock DSpace at some point).

cheers,
Andrea
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The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Javascript disabled on DSpace?

2015-03-30 Thread Andrea Schweer

  
  
Hi Susan,

On 31/03/15 12:31, Borda, Susan wrote:


  
  I just installed Space 5.1 with Mirage 2 on a Centos 6.6
  VirtualBox. When I go to my new DSpace page (localhost:8080/xmlui)
  I’m getting a message that says “_javascript_ has been disabled for
  your browser. Some features of this site may not work without it.”
  
  
  _javascript_ is working on other sites just not this one.
  
  
  Where do I enable _javascript_ for Dspace, is it in one of the
Mirage 2 or xmlui files?


This is not a DSpace setting, it's something in your browser. It's a
little bit odd for this to happen in what is presumably pretty much
a fresh Centos install. Can you try with a different browser? Your
VM has access to the Internet, yes?

Did the maven step of the build process complain about anything?
Mirage 2 will sometimes tell you that the build was successful even
when it wasn't, so you'll need to keep an eye on the output while
maven is running.

If none of these things help, could you try to switch on the
developer tools for your browser, then force-reload the page to see
whether you get any error messages to pinpoint the problem? In
Firefox, you'll want to open the Web Console (try Ctrl-Shift-K). In
Chrome, it appears to be called _javascript_ console (try
Ctrl-Shift-J).

cheers,
Andrea

-- 
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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-03-25 Thread Andrea Schweer

  
  
Hi George,

On 26/03/15 03:42, George Stanley Kozak
  wrote:


  
  
  
  So, I double
  checked the permissions on my solr index and tomcat.  They are
  both owned by the DSpace user.  If I bring my system up in
  DSpace 4.2 (after a restore), I have no problems.  If I bring
  it up in 5.1, I get the error: 
“SolrCore
'search' is not available due to init failure: Index locked
for write for core
search,trace=org.apache.solr.common.SolrException: SolrCore
'search' is not available due to init failure: Index locked
for write for core search”
I can’t even do
an re-index.
I have to say
that I’m kind of stumped here.  Works OK in 4.2, doesn’t
work in 5.1
  


How odd. Are you running the ant step (with the 5.1 code) as the
same user as tomcat? Also, when you run ant for the first time using
the 5.1 code, tomcat must not be running -- ant will upgrade
the solr indexes to the version used in DSpace 5.1 and it needs to
have exclusive access to the index while that runs (and the
mechanism for that is the write lock, which makes me suspect it's
involved in the problem you're seeing).

You have presumably checked already that the ant step with the 5.1
code doesn't throw any errors.

cheers,
Andrea

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Re: [Dspace-tech] Embargo problems DSpace 4.0

2015-03-25 Thread Andrea Schweer

  
  
Hi Antony,

On 26/03/15 05:24, Antony Corfield [awc] wrote:

  
  I've configured DSpace 4.0 to use simple
embargo functionality including submission forms and
  dspace.cfg below. Although the embargo is lifted on the correct
  date and seems to be working fine I can't see
  the dc.rights.embargoreason and dc.rights.embargodate in the full
  item metadata view or in the database. I can see the date in the
  policies for the item (attached).
  
  
  It seems that the reason and date aren't being copied to
these metadata fields. Prior to upgrade (from 1.8) this was
working and any items that were embargoed prior to upgrade do
have these metadata fields in the full item view and in the
database.
  
  
  Any help would be very much appreciated as we really need
embargo details in the item metadata.


The simple embargo functionality doesn't use item metadata at all.
All information is stored in the policies. So the behaviour you're
asking for doesn't exist in that mechanism. The settings you quote
in your e-mail don't apply when you use the simple embargo
functionality.

If having the embargo information in the policies is not sufficient
for your needs, your best bet is probably to add fields for the
embargo date and reason to input-forms.xml, possibly on a new page
if you want to keep them separated from the other item metadata.

cheers,
Andrea


   Embargo Settings 
  
  # DC metadata field to hold the user-supplied embargo terms
  #embargo.field.terms = SCHEMA.ELEMENT.QUALIFIER
  #awc
  embargo.field.terms = dc.rights.embargoreason
  
  
  # DC metadata field to hold computed "lift date" of embargo
  embargo.field.lift = dc.rights.embargodate
  
  
  # string in terms field to indicate indefinite embargo
  embargo.terms.open = forever
  
  
  # implementation of embargo setter plugin - replace with
local implementation if applicable
  plugin.single.org.dspace.embargo.EmbargoSetter =
org.dspace.embargo.DefaultEmbargoSetter
  
  
  # implementation of embargo lifter plugin - - replace with
local implementation if applicable
  plugin.single.org.dspace.embargo.EmbargoLifter =
org.dspace.embargo.DefaultEmbargoLifter



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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-03-25 Thread Andrea Schweer

  
  
Hi George,

On 26/03/15 10:55, George Stanley Kozak
  wrote:


  
  
  
  Yes, it has
  me stumped.  If I restore the Solr indexes and the postgres
  database back to the DSpace 4.2 versions and bring up DSpace
  4.2, everything works fine. 
  
I do shutdown
tomcat when I do the ant step.  Here are my steps, and let
me know if I have forgotten anything:
  


That all looks good so far


  

1) 
  Shutdown tomcat
2) 
  Run mvn –U clear package (I also tried
with the Mirage2 option)
3) 
  After successful build, I go to the
target/dspace-install directory and run “ant update”
  


As which user do you run ant? Same as the one that tomcat is running
as?


  

4) 
  After that is successful, I copy the
webpass over to tomcat
5) 
  Restart tomcat
6) 
  Go to view the system
The
system comes up and I have access to the database records,
but all browses and searches generate the index lock error.

  


When you look for the write locks after step 5, what are their
permissions? You should be able to find them (assuming a Linux
system) using
find [dspace]/solr -name "*.lock"

cheers,
Andrea


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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-03-24 Thread Andrea Schweer

  
  
Hi George,

On 25/03/15 10:06, George Stanley Kozak
  wrote:


  
  
  
  Thank you
  for your suggestions.  I did check and my tomcat (tomcat 7) is
  owned by my dspace user as is my solr index, so tomcat should
  be able to write to the solr directory (it works OK for 4.2). 
  So, I am not sure what is causing the permission problem, but
  I will keep checking. 
  


Have you run a chown with the -c flag on your solr directory? That
will tell you about any changes it makes. Might be worth it just so
you can go from "tomcat should be able to write to the solr
directory" to "tomcat is definitely able to write to the
solr directory". Just on the off-chance this is happening to you:
I've had nasty surprises when the solr directory was on a different
partition and symlinked into [dspace], chown -R didn't work across
the symlink (it changed ownership of the symlink but not of the
symlinked directory).

Also, if the permissions have been wrong in the past at some point,
sometimes the write.lock file sticks around with wrong write
permissions. In that case, it helps to stop tomcat, delete the
write.lock file, then start tomcat. 

cheers,
Andrea
    
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Re: [Dspace-tech] Error after install of DSpace 5.1

2015-03-24 Thread Andrea Schweer

  
  
Hi George,

On 25/03/15 06:42, George Stanley Kozak
  wrote:


  
  
  
  I upgraded our DSpace 4.2 XMLUI to
DSpace 5.1 (using Mirage 2).  The install went fine, but once
the system came up, if I try to view any records, I get:
“The server encountered an internal error
  that prevented it from fulfilling this request.”
and
Caused by:
  org.apache.solr.common.SolrException: Index locked for write
  for core search
and
Caused by:
  org.apache.lucene.store.LockObtainFailedException: Index
  locked for write for core search
 
Does anyone have any suggestions as to what
  I am doing wrong?
  


This is a permissions problem. Tomcat needs to have write
permissions on your [dspace]/solr directory and all its
subdirectories. Change the permissions and restart tomcat --
hopefully that will solve the issue.

cheers,
Andrea

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Re: [Dspace-tech] Problem running dspace stats-util -o

2015-03-22 Thread Andrea Schweer
Hi Ricardo,

On 21/03/15 23:56, RICARDO EITO BRUN wrote:
 when trying t run the stats-util -o command (after upgrading old 
 dspace Solr indexes with the Lucene library) I am getting this error:

 Exception: Server at http://localhost:8080/solr/statistics returned 
 non ok status:500

 Any suggestion? Tomcat is up when running the command.

Is there anything useful in your tomcat log file (probably catalina.out; 
in /var/log/tomcat6 on my RHEL6 machines)? What happens when you access 
that URL in a browser? Keep in mind that you'll need to access it from 
the machine itself, eg using curl or wget if it doesn't have a graphical 
interface.

cheers,
Andrea

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Re: [Dspace-tech] freshly installed dspace 5 has problems

2015-03-19 Thread Andrea Schweer
r.java:408)

  at
  org.apache.coyote.ajp.AjpProcessor.process(AjpProcessor.java:200)
  at
  org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)

  at
  org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)

  at
  java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)

  at
  java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)

  at java.lang.Thread.run(Thread.java:745)

  
  

  
  I searched
online for solutions, but got no hint. Any hint will be
appreciated.
  
  
  Thank you
so much!
  
  Hongxing Geng
  Library Services
  Athabasca University
  Phone: 780-675-6589

  
  
  
  
  
  This communication is intended for the use of the recipient to
  whom it
  is addressed, and may contain confidential, personal, and or
  privileged
  information. Please contact us immediately if you are not the
  intended
  recipient of this communication, and do not copy, distribute, or
  take
  action relying on it. Any communications received in error, or
  subsequent reply, should be deleted or destroyed.
  
  
  
  
  
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+64-7-837 9120
  


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Re: [Dspace-tech] Modules?

2015-03-19 Thread Andrea Schweer

  
  
Hi Susan,

On 20/03/15 03:45, Borda, Susan wrote:


  
  
  
  I was
  looking at this Stackoverflow article:
http://stackoverflow.com/questions/27556499/dspace-version-4-x-adding-facet-which-messages-xml-file-should-i-edit?rq=1
  


Oh sorry, I didn't spot in your original e-mail that you were asking
about messages.xml as well. So dspace.cfg and discovery.xml, these
files you need to edit these in place. For all messages.xml files,
you have to decide how to manage these - you can either modify them
in place, or copy them to the corresponding path in a modules
directory and edit that copy. 

I personally started out by editing copies of messages.xml in the
modules directory. However, given that all our code etc is under git
control, I find it much easier now to edit in place. That way, I can
use git's merge tools to consolidate my own changes with those
coming in with new DSpace versions, rather than having to manually
copy my changes back.

Do keep in mind that if you change anything in the dspace-xyz
directories, you need to run a full rebuild (in the top-level
dspace-src directory). If all your changes live in dspace-src/dspace
then you can use the quick rebuild option. I have other changes in
the dspace-xyz directories, so I have to run a full rebuild anyway.
https://wiki.duraspace.org/display/DSDOC5x/Advanced+Customisation#AdvancedCustomisation-DSpaceSourceRelease

So the "right way" to do this really depends on your local
processes.

cheers,
Andrea

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The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Modules?

2015-03-18 Thread Andrea Schweer

  
  
Hi Susan,

On 18/03/15 03:54, Borda, Susan wrote:


  
  
  
  Does anyone use the “Modules” option for
advanced configuration? I was wondering if that’s where I should
be putting a copy of dspace.cfg, discovery.xml and messages.xml
after I modify the facets and filters?
  


I don't think you can use the modules for configuration files. 

cheers,
Andrea

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Re: [Dspace-tech] Error running mvn package

2015-03-18 Thread Andrea Schweer

  
  
Hi Lewatle,

On 18/03/15 22:04, Lewatle Phaladi
  wrote:


  
  
  
  
[ERROR] Failed to execute goal on project
  solr: Could not resolve dependencies for project
  org.dspace.modules:solr:war:5.1: Failed to collect
  dependencies for [org.dspace:dspace-solr:war:skinny:5.1
  (compile), org.dspace:dspace-solr:jar:classes:5.1 (compile),
  org.apache.solr:solr-analysis-extras:jar:4.10.2 (compile),
  com.ibm.icu:icu4j:jar:51.1 (compile),
  org.apache.lucene:lucene-analyzers-icu:jar:4.10.2 (compile),
  org.apache.lucene:lucene-analyzers-smartcn:jar:4.10.2
  (compile),
  org.apache.lucene:lucene-analyzers-stempel:jar:4.10.2
  (compile), xalan:xalan:jar:2.7.0 (compile)]: Failed to read
  artifact descriptor for org.restlet.jee:org.restlet:jar:2.1.1:
  Could not transfer artifact
  org.restlet.jee:org.restlet:pom:2.1.1 from/to
  sonatype-releases
  (https://oss.sonatype.org/content/repositories/releases/):
   Access denied to:
https://oss.sonatype.org/content/repositories/releases/org/restlet/jee/org.restlet/2.1.1/org.restlet-2.1.1.pom
  , ReasonPhrase:Forbidden. - [Help 1]
  


This suggests to me that you're running this on a machine that is
behind a mandatory authenticated proxy. You'll need to set this up
in your maven settings file (~/.m2/settings.xml if you are on a
Linux machine). See
http://maven.apache.org/guides/mini/guide-proxies.html

cheers,
Andrea

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Re: [Dspace-tech] Mirage2 default XMLUI Theme

2015-03-16 Thread Andrea Schweer
Hi,

On 17/03/15 04:08, Tim Donohue wrote:
 Mirage 2 is already included in the DSpace 5.x release, so you no longer
 need to download it separately:

I believe what Lewatle was referring to is that a DSpace build with 
Mirage 2 enabled needs to retrieve the build tools and JavaScript 
dependencies during the maven step. The dependencies are downloaded even 
when the build tools are installed separately. So the build process with 
Mirage 2 does require extra settings on the machine where the build is 
being run, compared to a build without Mirage 2 enabled.

I think this may only be opening up outgoing connections to github.com 
via the git and/or https protocols. There is a workaround on the wiki 
for limiting this to https only, at least: 
https://wiki.duraspace.org/display/DSDOC5x/Mirage+2+Configuration+and+Customization#Mirage2ConfigurationandCustomization-CommonBuildIssues
 
I can't remember whether outgoing http/https needs to be enabled to 
domains other than github as well. But with the dependencies now fixed 
to specific releases, perhaps there might be a way of including these in 
the binary release / including Mirage 2 in the binary release in a way 
that does not require the build tools (bower, grunt, compass) to be present.

cheers,
Andrea

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Re: [Dspace-tech] Item Submission - defaults

2015-03-12 Thread Andrea Schweer

  
  
Hi,


On 12/03/15 19:21, Sean Carte wrote:


  
On 12 March 2015 at 01:01, Andrea
  Schweer schw...@waikato.ac.nz
  wrote:
  
On 11/03/15 21:09, Sean Carte wrote:

  I have a follow-up question: I have enabled the
  'initial questions' page in item-submission.xml, but
  we would prefer the checkboxes to be unchecked as it
  is the exception rather than the norm that we need
  multiple titles or a previously published date.
  
  Is there any way to make this happen?


  
  Not easily. However -- are you using JSPUI or XMLUI? In
  XMLUI, I don't think those questions make much difference
  at all. I think this is different in JSPUI, but I'm not
  sure.
  
  

We're using the XMLUI and the problem is that it adds two
additional clicks at the start of almost every submission, as
only a small percentage of submissions actually require the
previously published date field.


I think I worked out the solution: skip
  the first step and modify the date published field so that it
  isn't required.

  


That would have been my suggestion, yes :)

cheers,
Andrea

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Re: [Dspace-tech] Repeating pairs of metadata fields

2015-03-12 Thread Andrea Schweer

  
  
Hi Courtney,

On 13/03/15 01:06, Courtney Earl
  Matthews wrote:


  
  
  
  We’re
  specifically interested in providing a way for the user to
  link their item (article) to their externally hosted dataset.
  
I think in the
short-term we’ll adopt the fixed list approach using the
dc.identifier set-up as our example.
  


For a fixed list of link types, that sounds like the best option to
me.


  

Would you share an example of the
enhancement requests you mentioned? We’re using XMLUI too.
Our group had a brief conversation about storing triples in
 bitstreams.

  


I'm not sure the details are written down in a way I can easily
copypaste, but this came up in the context of thesis
submissions. There had been a number of requests from higher degree
students to add various types of links to their thesis record -- off
the top of my head, this included datasets, source code, geo data,
audiovisual content hosted elsewhere, links to the research group's
home page, etc. Sometimes there might be multiple links in the same
category. This got us thinking that it would be nice to give
students more freedom to add URLs to related content (presumably
still subject to some sort of auditing/approval process by
repository staff). And since there might be multiple links of the
same type, in terms of user friendliness it would be good to have
some way of distinguishing between them, so that end users know
what's what.

We never actually got around to working on this. However, I do have
a working example of including content from an XML bitstream on the
item's page. This is what we do for LERNZdb, a freshwater quality
data repository; the item pages embed a Google map with markers for
the data collection sites (eg
http://lernzdb.its.waikato.ac.nz/handle/123456789/1140) and these
coordinates come from an XML bitstream rather than from the item's
metadata. (Never mind that we later added the geo coordinates to the
item metadata for a different purpose, as you can see on the full
item view -- the geo coordinates in the Google map don't know about
those metadata values.) 

There is a complicating factor in our case: the repositories in
question don't use the XMLUI submission process for theses, instead
the theses are submitted using a standalone PHP application and come
in via SWORD. So if we were to implement this, we probably would
create the external links XML file in the PHP application. 

That said, I've written quite a few custom submission steps and I
think it'd be pretty easy to write submission step code where the UI
component lets users add a number of (type,description,link) triples
and the processing component saves these to an XML bitstream and
attaches it to the submission.
https://wiki.duraspace.org/display/DSDOC5x/Submission+User+Interface#SubmissionUserInterface-CreatingnewSubmissionSteps

cheers,
Andrea

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Re: [Dspace-tech] Item Submission - defaults

2015-03-11 Thread Andrea Schweer
Hi Sean,

On 11/03/15 21:09, Sean Carte wrote:
 I have a follow-up question: I have enabled the 'initial questions' 
 page in item-submission.xml, but we would prefer the checkboxes to be 
 unchecked as it is the exception rather than the norm that we need 
 multiple titles or a previously published date.

 Is there any way to make this happen?

Not easily. However -- are you using JSPUI or XMLUI? In XMLUI, I don't 
think those questions make much difference at all. I think this is 
different in JSPUI, but I'm not sure.

cheers,
Andrea

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Re: [Dspace-tech] Trouble with Roles and Permissions

2015-03-10 Thread Andrea Schweer
Hi Guillermo,

On 11/03/15 06:30, Guillermo Esteban Murillo Goussen wrote:
 I had a user registered as administrator, so this user could see all 
 the queues of submissions.  Then I removed him from the administrator 
 group, in fact he doesn't belong to any group now, so technically at 
 My DSpace page he should see only his archived items or unfinished 
 submissions... BUT... he is still seeing all the queues and 
 submissions he saw as an administrator.

 How can I force an update of the permissions, roles, or My DSpace 
 page so they correspond to the last changes made.

the visibility for pool tasks / owned tasks is set at the time the item 
enters its current state. Later changes to the workflow roles do not 
apply automatically to existing workflow tasks. Unfortunately the only 
way currently is to change the state of all affected workflow tasks (eg 
if they are in the pool, have another user take them and then return 
them into the pool). Via the user interface, that is. In your case, you 
could go into the database and delete the rows corresponding to the user 
id from the tasklistitem table, I believe that should be enough.

There is a Jira issue for this: https://jira.duraspace.org/browse/DS-457 
and according to the Jira issue, this has been discussed by the 
committers and maybe also by DCAT, the DSpace Community Advisory Team. 
However, it looks like there currently is no volunteer to work on this; 
from my point of view, it would be good to have a clearer idea of what 
behaviour would work for the majority of DSpace users. I'll add a note 
to the Jira issue with your comments.

cheers,
Andrea

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Re: [Dspace-tech] Dspace is losing session persistence on Internet Explorer after click on handle, any idea why?

2015-03-10 Thread Andrea Schweer

  
  
Hi Paulo,

does the user's IP address stay the same? I've had problems with
sessions getting lost when the user was behind a set of
load-balanced proxies; when requests from the same user went through
different proxy machines, they ended up with different IP addresses
and the session hijacking prevention kicked in (see the
xmlui.session.ipcheck property, I'm not sure what the equivalent is
for JSPUI if that's what you're using).

cheers,
Andrea

On 11/03/15 03:59, Paulo Graça wrote:


  
  Some people have reported us that they are losing the
  authenticated session after clicking on the handle link, on the
  screen after the item is published.
  We are using version 3.2 of DSpace on CentoOS 6.5. And the user
  was using Internet Explorer 10 with compatibility mode
  (identifying himself as IE7) on Windows 7.
  
  What the user does?
  
   1. Submits the item
   2. Goes to his personal area and accepts the task for that item
  (has work-flow in the collection) 
   3. Edit the item as a reviewer and adds more metadata
   4. Publishes the item and a handle is assign
   5. On the confirmation page, clicks on the handle link
  
  What sometimes happens?
  The user loses is authenticated session
  
  What we verified?
   . The item is correctly published
   . This issue happens when:
  
  Before the pattern:
  apache_access.log
  USER_IP -
  - [06/Mar/2015:14:35:17 +] "POST /mydspace HTTP/1.1" 200
  12937 "http://example.com/mydspace"
  "Mozilla/5.0 (compatible; MSIE 10.0; Windows NT 6.1;
  Trident/6.0)" 433873
  
  dspace.log
  2015-03-06 14:35:17,700 INFO 
  org.dspace.workflow.WorkflowManager @ USER@HOST:session_id=SESSION_ID_ENDS_WITH_C20436F:ip_addr=USER_IP:advance_workflow:workflow_item_id=16200,item_id=16945,collection_id=223,old_state=4,new_state=7
  2015-03-06 14:35:17,713 INFO  org.dspace.search.DSIndexer @
  Writing Item: HANDLE_PREFIX/16836 to Index
  2015-03-06 14:35:17,716 INFO  org.dspace.search.DSIndexer @
  Wrote Item: HANDLE_PREFIX/16836 to Index
  2015-03-06 14:35:17,876 INFO 
  org.dspace.usage.LoggerUsageEventListener @
  USER@HOST:session_id=SESSION_ID_ENDS_WITH_C20436F:ip_addr=USER_IP:advanced_workflow_workflow:workflow_id=16200
  
  
  After the pattern:
  apache_access.log
  USER_IP -
  - [06/Mar/2015:14:35:19 +] "GET
  /handle/HANDLE_PREFIX/16836 HTTP/1.1" 200 34333 "-"
  "Mozilla/5.0 (compatible; MSIE 10.0; Windows NT 6.1;
  Trident/6.0)" 29615
  
  
  dspace.log
  2015-03-06

  14:35:19,987 INFO  org.dspace.app.webui.servlet.HandleServlet
  @ anonymous:session_id=SESSION_ID_ENDS_WITH_BD2F787:ip_addr=USER_IP:view_item:handle=HANDLE_PREFIX/16836
  
  
  
  What we asked them to do?
   1. Try 1 week with a different browser (Firefox 31.3.0)
   2. Try 1 week without the compatibility mode (Internet Explorer
  10).
  
  
  What were the results?
  After the first week the problem didn't occurred with Firefox. On
  the second week the problem occurred with Internet Explorer.
  
  Any ideas what might be the problem with Internet Explorer/handle
  system?
  
  Note: the http to https switch issue doesn't occur in this case.
  
  
  
  -- 
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Re: [Dspace-tech] Item Submission - defaults

2015-03-09 Thread Andrea Schweer
Hi Sean,

On 09/03/15 21:31, Sean Carte wrote:
 In HTML forms I can use 'SELECTED' in SELECT lists to make something a 
 default. Am I missing some easy way to make a value-pair in 
 input-forms a default like that?

In my repositories, the item template mechanism is used for this sort 
of thing. So when 99% of the items in a collection are in English, we'll 
set up an item template for that collection with that metadata value, 
which makes it selected by default in the submission form. The 
submitters can just change the value if it isn't correct. The one 
drawback I've heard of with this approach is that reviewers can't tell 
whether the submitter explicitly selected a value or just went with the 
default (usually this isn't a problem but sometimes it is).

cheers,
Andrea

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Re: [Dspace-tech] Repeating pairs of metadata fields

2015-03-09 Thread Andrea Schweer

  
  
Hi Courtney,

On 10/03/15 07:57, Courtney Earl
  Matthews wrote:


  
  
  
  Does anyone have experience creating
pairs of repeatable metadata fields within the input-forms.xml?
Alternatives?
 
I would like to enable the user to enter
  the name of a related resource paired with its URI
  (dc.relation, dc.relation.uri) and then repeat as needed.
  


The DSpace metadata model doesn't let you associate "split" metadata
like that. 

If the names of your related resources are a fixed list (eg Source
Code, Dataset) then you could create custom metadata fields, eg 
uw.relation.sourcecode
uw.relation.dataset
...

and set this up in input-forms the same way as dc.identifier is
currently set up in the stock DSpace input forms:
https://github.com/DSpace/DSpace/blob/dspace-5.1/dspace/config/input-forms.xml#L120
and with the list of possible names set up as value pairs:
https://github.com/DSpace/DSpace/blob/dspace-5.1/dspace/config/input-forms.xml#L236

If you want users to enter a free-text description of the related
resource, it gets much trickier. This is actually on a list of
enhancement requests for some of "my" repositories; the request
there was for triples (type of link from set of fixed options,
optional free-text description, URL). I've been thinking of writing
a custom submission step that stores these triples in an XML
bitstream attached to the item; since we're using XMLUI, we can then
read in that bitstream from the XSL that generates the item page and
add the links to the page together with their description and type.

You could cheat and as your users to enter them as eg 
name|link
and then process that as required in your theme code -- it's a bit
of an ugly hack but depending on whether you do self-submission or
mediated submission, it could work?

cheers,
Andrea
    
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Re: [Dspace-tech] install error for upstream/master

2015-03-04 Thread Andrea Schweer
On 05/03/15 10:35, helix84 wrote:
 On Wed, Mar 4, 2015 at 8:34 PM, Monika C. Mevenkamp
 moni...@princeton.edu wrote:
 after the compile I still find WEB-INF/lib/servlet-api-2.5-20081211.jar in
 webapps/*/WEB-INF/lib directories
 Sorry for asking the obvious, but did you run mvn clean?

Seconding helix84, pretty much every time I've had weird why is that 
version of the jar there issues was when I had forgotten to run mvn 
clean. The only other time was when I had a very messy pom file in a 
custom module (before I understood scopeprovided/scope and in the 
middle of switching DSpace versions), and I would assume that's not the 
case in the main DSpace codebase :)

cheers,
Andrea

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Re: [Dspace-tech] Log file attached: Dspace migration from 1.7 to 5 in new setup(due to harddisk crash)

2015-03-03 Thread Andrea Schweer
t connection
LOG:  unexpected EOF on client connection
 
   

  
  
 
  


  
  
  
  
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Re: [Dspace-tech] install error for upstream/master

2015-03-03 Thread Andrea Schweer

  
  
Hi Monika,

On 04/03/15 12:42, Monika C. Mevenkamp
  wrote:


  
  I am trying to run upstream/master with code changes of mine
  inside dspace-api 
  
  
  I created a new database 
  did mvn package  and ran fresh_install 
  when going to home page I get the following error 
  
  
  
http://localhost:8080/jspui/internal-error
-- Method: GET
-- Parameters were:

  
org.apache.jasper.JasperException:
Unable to compile class for JSP:

  
An error occurred at line: [94]
in the generated java file:
[/usr/local/Cellar/tomcat/8.0.17/libexec/work/Catalina/localhost/jspui/org/apache/jsp/index_jsp.java]
The method getDispatcherType()
is undefined for the type HttpServletRequest
  


My first suspect would be the version of servlet-api that comes with
your tomcat install. A quick web search for "The method
getDispatcherType() is undefined for the type HttpServletRequest"
leads to this:
http://stackoverflow.com/questions/26436463/getdispatchertype-is-undefined-for-the-type-httpservletrequest

From this line in the top-level pom, it looks to me like DSpace
expects version 2.5 of servlet-api to be provided by your web
application container:
https://github.com/DSpace/DSpace/blob/master/pom.xml#L1030

I don't know whether you can just swap out the servlet-api jar that
comes with tomcat. One of the answers to the stackoverflow question
suggests going the other direction, ie changing the version number
in the DSpace pom file to what is provided by your web application
container (3.1, it looks like?). I suspect in that case you'll get
compile-time errors about the same thing.

The DSpace docs say we support Tomcat 7 or newer; if this problem
persists for Tomcat 8 then this might be worth a Jira issue.

cheers,
Andrea

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The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] Changing the community/collection name

2015-03-02 Thread Andrea Schweer
d, 
Anja 




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Re: [Dspace-tech] [Dspace-devel] DSpace 5 and solr usage statistics data

2015-03-02 Thread Andrea Schweer
Hi helix84,

On 02/03/15 20:21, helix84 wrote:
 at least part of your problem - the missing uid for old documents - is
 a known open issue:

 https://jira.duraspace.org/browse/DS-2212

Perfect thanks, I hadn't spotted that, even though I saw the same thing 
when I tried out the sharding.

I see there are a couple of approaches on there for retrospectively 
adding uids (with code, thanks folks!), so I'll look into using one of 
those in the hope that it will also fix my docValues problem.

cheers,
Andrea

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[Dspace-tech] DSpace 5 and solr usage statistics data

2015-03-01 Thread Andrea Schweer
Hi all,

I'm working on DSpace 4-5 upgrades and I've run into a problem with the 
data in the solr-based usage statistics. Before I open a Jira issue, I 
thought I'd check whether anyone else has seen the same thing; we've 
heavily customised the usage statistics, so perhaps the problem affects 
only my repositories.

In DSpace 5, the fields for geographical information in the usage stats 
were changed in the solr schema to have docValues=true 
(https://github.com/DSpace/DSpace/commit/8e2f87e75548b48ad44c6257b47bf45af3e5b4ef).
 
What I'm now seeing is that the statistics pages only show geographical 
information for visits from the upgrade onwards. Manually running the 
corresponding facet queries via curl shows the same, so the issue is 
definitely in what is coming out of solr, not in the DSpace code.

I believe that the issue is that when docValues data is present for a 
field, only those solr documents are included in facet query results 
that actually have the docValues (see 
http://www.signaldump.org/solr/qpod/15072/adding-docvalues-after-or-in-the-middle-of-indexing).
 
The pre-upgrade data doesn't have docValues, so they are omitted from 
the facets used by that part of the statistics pages. Setting 
docValues=false and _then_ doing the upgrade retains all geographical 
data in the stats (but of course throws away the performance 
improvements gained by enabling docValues).

I'm assuming I might be able to fix the docValues problem by re-indexing 
all documents in the index, and perhaps the solr index auto-upgrade 
tries to do just that. However, quite a few documents in the index don't 
have a uid (required unique key field). I'm wondering whether I'm seeing 
this issue only because we've strung along our data/customisations 
across several updates. Back when the solr-based usage stats first 
became a part of DSpace, the usage stats solr documents didn't have any 
unique identifiers. It looks like this was added for DSpace 3: 
https://github.com/DSpace/DSpace/commit/808bc6fc5d169f4996523c20a101a30e3e8c6a43#diff-c4dd1d4c13c979500d59399da9c0e861R325
 


So -- has anyone upgraded a repository with pre-3.0 usage stats data to 
5.x? Did the geographical information in the usage stats make it along? 
I'm talking about the Top country views / Top city views sections on 
the item stats pages, eg 
http://demo.dspace.org/xmlui/handle/10673/3/statistics

cheers,
Andrea

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Re: [Dspace-tech] DSpace 5 - Embargo lift date - message to administrator

2015-02-26 Thread Andrea Schweer

  
  
Hi,

On 27/02/15 01:09, Hilton Gibson wrote:


  

  On 26 February 2015 at 14:05, Adan
Roman aro...@arvo.es
wrote:
Sending
  an email to administrator can be done creating a curation
  tast that search the resource policy of  items and send an
  email if its date is near.
  
  
  Do you have a
published example of this curation task?

  


I'm not Adan, but I have written a task that counts items with
resource policies that have start and/or end dates in the future. So
this could be modified to include a check how close to the current
date these will come into effect. It's here:

https://github.com/lconz-irr/Curation-Tasks/blob/6dbaca66be7b0d55bc5e0b551172ac5dc6006ab1/src/main/java/nz/ac/lconz/irr/curate/task/thesisembargo/FindAutolift.java

Note that it expects three configuration settings via the curation
task configuration mechanism (ie file in the config/module directory
with name taskname.cfg where taskname matches the name of this task
in curate.cfg):

recipients - comma-separated list of recipients for the
e-mail. If this is empty, the task can still be
run from the command line or admin interface, it just won't e-mail.
email.send-if-empty
  - whether to send an e-mail even when there are 0 such items.
  Default false.
template - name of
the e-mail template. Default "autolift_items_email". 

The e-mail template can simply look like this:
  
# Parameters: {0} curation task output
Subject: Items with future policies

The curation task reports the following result:

{0}

DSpace

I hope this helps.

  cheers,
Andrea

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Re: [Dspace-tech] Manakin, collection name

2015-02-26 Thread Andrea Schweer

  
  
Hi,

On 27/02/15 01:16, Anja Radoicic wrote:


  
  This helps me save the trail variable. Now I have to somehow acces
  the fourth or fifth element of the trail. Is there a way to do
  that? 
  
  Also, this is just a workaround to access the collection name. Is
  there another way that you would suggest to get to a collection
  name or community name from xsl file?


There is, it's just one more step. Look at this item here, on the
demo server: http://demo.dspace.org/xmlui/handle/10673/93
Add ?XML to look at the XML, like you did for the trail:
http://demo.dspace.org/xmlui/handle/10673/93?XML
Then look at this section here:

referenceSet
  id="aspect.artifactbrowser.ItemViewer.referenceSet.collection-viewer"
  type="summaryView" n="collection-viewer"
      reference repositoryID="10673" type="DSpace Item"
  url=""
          referenceSet type="itemPageSummaryList"
  rend="hierarchy"
              reference repositoryID="10673" type="DSpace
  Collection" url=""/
          /referenceSet
      /reference
  /referenceSet

The hierarchy tells you which collection this item is in. It gives
you the link to the collection's mets.xml. So have a look at that
one http://demo.dspace.org/xmlui//metadata/handle/10673/22/mets.xml
and you will see the title here:
dim:field mdschema="dc" element="title"The scramble for and
Partition of Africa/dim:field

Now, to put this all together -- in the same spot where you are
assigning the trail to a variable, instead do this:
obtain the URL of the collection's mets.xml file from the snippet
above
load that mets file via the XSL document function
(http://www.w3schools.com/xsl/func_document.asp)
from the loaded document, select the title metadata (and/or whatever
else you want, eg identifier for the link).

then assign _that_ to a variable and pass it into item-view.xsl

I hope this makes sense, I don't have time to go into more detail
right now, sorry.

cheers,
Andrea

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Re: [Dspace-tech] dspace 5 and mysql

2015-02-17 Thread Andrea Schweer

  
  
Hi,

On 18/02/15 12:53, Daniel G wrote:

  i
need to change the postgresql to mysql on dspace 5
  


DSpace officially supports only PostgreSQL and Oracle DB
https://wiki.duraspace.org/display/DSDOC5x/Installing+DSpace#InstallingDSpace-RelationalDatabase:%28PostgreSQLorOracle%29

While it may be possible to make DSpace work with MySQL, this would
require major code changes.

cheers,
Andrea

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Re: [Dspace-tech] DSpace 5.0 XMLUI Display problem with Screenshot

2015-02-11 Thread Andrea Schweer

  
  
Hi,

On 12/02/15 02:16, Fausto Carvalho
  Marques Silva wrote:


  
  I had the same problem in my
instalation, for me it was a proxy thing that generated a bad
css 
in the  the construction part of "mvn package" of Mirage 2.
It was resolved by setting

Bower and Npm proxy variables.
  


Would you mind sharing how you set those? Then we can update the
official documentation, to hopefully help the next person with the
same issue.
https://wiki.duraspace.org/display/DSDOC5x/Mirage+2+Configuration+and+Customization#Mirage2ConfigurationandCustomization-ThebuildprocessandenablingMirage2

cheers,
Andrea

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Re: [Dspace-tech] DSpace 5 on server 2012 R2

2015-02-09 Thread Andrea Schweer

  
  
Hi,

there are instructions for deploying the web apps here:
https://wiki.duraspace.org/display/DSDOC5x/Installing+DSpace#InstallingDSpace-Installation
step 10. I don't know whether you can deploy the solr webapp via the
tomcat application manager.

cheers,
Andrea

On 06/02/15 10:28, Goran Ivaz wrote:


  
  
  
  
I deployed
web.xml only. But I am unable to start solr….
 
FAIL
- Application at context path /solr could not be started
FAIL
- Encountered exception
org.apache.catalina.LifecycleException: Failed to start
component [/solr]
 
Any
suggestions ?
 
Thanks
 

  
From: Andrea Schweer
[mailto:schw...@waikato.ac.nz] 
Sent: Wednesday, February 04, 2015 4:55 PM
To: Goran Ivaz; dspace-tech@lists.sourceforge.net
Subject: Re: [Dspace-tech] DSpace 5 on server
2012 R2
  

 
Hi,

  On 05/02/15 12:21, Goran Ivaz wrote:


  If
  I only want to use the /xmlui interface in Tomcat 8 which
  other webapp must I add/deploy to Tomcat. So far I added
  only the xmlui webapp and it seems OK. Do I need to deploy
  any other webapps from the DSPace directory ?


Assuming you're using the default settings, you will also
need the solr webapp (for search, browse, recently added
lists, facets and usage statistics).

cheers,
Andrea



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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] R: R: R: Mirage 2

2015-02-09 Thread Andrea Schweer

  
  
Hi,

in your attachment, I see this just before it starts to complain:


  
   EACCES EACCES,
  mkdir '/tmp/dspace/bower'
  [INFO]

  
  [INFO]
  Stack trace:
  [INFO]
  Error: EACCES, mkdir '/tmp/dspace/bower'
  [INFO] 
  
  
  

That looks like a permissions problem to me. Ensure that the dspace
user has permission to write to /tmp/dspace and try again, does it
work then?

cheers,
Andrea

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Re: [Dspace-tech] R: R: Mirage 2

2015-02-05 Thread Andrea Schweer
Hi Massimiliano,

We tried to do mvn with not root user as DSPACE but we have the same
 problem.

 We have changed the git too but for now we haven’t solved the problem.


What error messages are you getting -- anything useful from the maven step?
​
cheers,
Andrea
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Re: [Dspace-tech] DSpace 5 on server 2012 R2

2015-02-04 Thread Andrea Schweer

  
  
Hi,

On 05/02/15 12:21, Goran Ivaz wrote:


  
  
  
  If I only want to use the /xmlui
interface in Tomcat 8 which other webapp must I add/deploy to
Tomcat. So far I added only the xmlui webapp and it seems OK. Do
I need to deploy any other webapps from the DSPace directory ?
  


Assuming you're using the default settings, you will also need the
solr webapp (for search, browse, recently added lists, facets and
usage statistics).

cheers,
Andrea

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IRR Technical Specialist, ITS Information Systems
The University of Waikato, Hamilton, New Zealand
  


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Re: [Dspace-tech] R: R: Mirage 2

2015-02-03 Thread Andrea Schweer

  
  
Hi Sean,

On 03/02/15 20:38, Sean Carte wrote:


  
On 3 February 2015 at 07:23, Sean Carte
  sean.ca...@gmail.com
  wrote:
  

  
  
  Yes, I did (see above). I'll try
again with a fresh download and see if that makes any
difference.

  
  

Well, it seems the problem is me. (Was
  there ever any doubt?) I had changed the git config, but I did
  it as root instead of dspace, so that had no effect on the mvn
  build process. I ran the git config command as the dspace user
  and was able to build Mirage 2 without errors.

  


Perfect, glad to hear you got it working and thanks for letting us
know what the problem was. I've updated the official DSpace
documentation to clarify that it needs to be the same user account
as used for the maven step.

cheers,
Andrea

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Re: [Dspace-tech] R: R: Mirage 2

2015-02-02 Thread Andrea Schweer
Hi Hilton,

On 02/02/15 20:47, Hilton Gibson wrote:
 I have tested again and it seems DSpace 5.X with Mirage 2 only works 
 on Ubuntu 14.04 LTS.

I've compiled it successfully on RHEL6.6, so this is very definitely not 
true.

cheers,
Andrea

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Re: [Dspace-tech] R: R: Mirage 2

2015-02-02 Thread Andrea Schweer

  
  
Hi Sean,

On 02/02/15 19:19, Sean Carte wrote:


  

  On 2 February 2015 at 06:31, Andrea
Schweer schw...@waikato.ac.nz
wrote:

On 31/01/15 00:19, Sean Carte wrote:

  For what it's worth, I've got the same error and I'm
  running mvn as the dspace user.
  
  I suspect the problem is due to the firewall here.
  Following Andrea's suggestion of changing git to use
  https did allow maven to download more things, but
  still not enough.


  
  Are you getting any error messages during the maven build
  step? If not, is there a way you might be able to get a
  list of denied outgoing access attempts from your
  firewall? I'm assuming you're allowing outgoing https
  access to github and maven central / wherever else you're
  getting your maven artifacts from.
  
  

Unfortunately it's the institutional
  firewall and I don't have access to those logs. The other
  themes work, just not Mirage 2.
  

Rerunning mvn with a close eye on the
  output, this doesn't look too healthy:
  

[INFO] bower
  datatables#1.10.3  
  ECMDERR Failed to execute "git ls-remote --tags --heads git://github.com/DataTables/DataTables.git",
  exit code of #128

  


Did you run the git config change that I put on the wiki? This is
the exact error message I got, and forcing git to use https rather
than the git protocol fixed the problem for me (also a firewall
issue).

git config --global url."https://github.com/".insteadOf
git://github.com/
see
https://wiki.duraspace.org/display/DSDOC5x/Mirage+2+Configuration+and+Customization#Mirage2ConfigurationandCustomization-CommonBuildIssues

cheers,
Andrea
    
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Re: [Dspace-tech] R: R: Mirage 2

2015-02-01 Thread Andrea Schweer
Hi,

On 31/01/15 00:19, Sean Carte wrote:
 For what it's worth, I've got the same error and I'm running mvn as 
 the dspace user.

 I suspect the problem is due to the firewall here. Following Andrea's 
 suggestion of changing git to use https did allow maven to download 
 more things, but still not enough.

Are you getting any error messages during the maven build step? If not, 
is there a way you might be able to get a list of denied outgoing access 
attempts from your firewall? I'm assuming you're allowing outgoing https 
access to github and maven central / wherever else you're getting your 
maven artifacts from.

cheers,
Andrea

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Re: [Dspace-tech] Mirage 2

2015-01-29 Thread Andrea Schweer

  
  
Hi,

On 30/01/15 01:19, Massimiliano Cilurzo
  wrote:


  
  
  
   
  We have just installed DSPACE 5.0 on our test environment, and
  we would like to use the Mirage 2 theme.
But
after  installing it we have this problem:
Syntax
error: File to import not found or unreadable:
../vendor/bootstrap-sass-official/assets/stylesheets/bootstrap.
 
Load paths:
   
Compass::SpriteImporter
   
/usr/local/src/dspace-5.0-src-release/dspace/modules/xmlui-mirage2/target/themes/Mirage2/styles
   
/usr/local/src/dspace-5.0-src-release/dspace/modules/xmlui-mirage2/target/rubygems/gems/compass-core-1.0.3/stylesheets
    on
line 16 of styles/main.scss
  


I just had this problem a couple of days ago. For me, maven said
that the build had been successful, but in reality it had failed to
download some files. This is because the server I was running the
build on has restricted access to the outside world. For me,
configuring git to use the https protocol rather than the git
protocol did the trick. You do also need to have git installed on
the machine where you're running maven. Have a look here for common
Mirage 2 build issues: 
https://wiki.duraspace.org/display/DSDOC5x/Mirage+2+Configuration+and+Customization#Mirage2ConfigurationandCustomization-CommonBuildIssues

cheers,
Andrea

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Re: [Dspace-tech] Submission class not being added to dspace-api-4.2.jar

2015-01-20 Thread Andrea Schweer

  
  
Hi Tim,

On 21/01/15 12:31, Tim Au Yeung wrote:


  
  I’m trying to add a step to the submission workflow. I’ve created
  the jsp page and the corresponding classes in the dspace-api and
  dspace-jspui according the sample step example. I’m doing a mvn
  clean package but it’s not adding the dspace-api class in into the
  dspace-api-4.2.jar. When I compile using my IDE, the class gets
  created with no problems though. Any suggestions for what I might
  be missing here?


What directory are you running the mvn clean package in? If you
place things in dspace-api and dspace-jspui, you will need to run
mvn from the top-level source directory ([dspace-src] in the
documentation). My guess is that you're using the quick build option
in [dspace-src]/dspace; in order for that to work, you will need to
place your custom code under [dspace-src]/dspace/modules instead,
see also
https://wiki.duraspace.org/display/DSDOC4x/Advanced+Customisation

cheers,
Andrea

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Re: [Dspace-tech] Issues with spam from Request a Copy

2014-10-16 Thread Andrea Schweer

  
  
Hi,

On 17/10/14 04:01, Ryan Ammerman wrote:


  
  
  
  We’ve recently copied our older DSpace
instance over to a test server and have upgraded it to 4.2
there. A few weeks later a couple users reported receiving
several hundred “Request copy of document” e-mails from the test
server filled in with bogus e-mail addresses  and usernames.
  


I recently got one obviously spammy-looking request from one of "my"
repositories (running DSpace 4.2). I thought I had disabled
request-a-copy but apparently I hadn't. I haven't had any more
requests after commenting out request.item.type.

cheers,
Andrea

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Re: [Dspace-tech] Solr Statistics still not working DSpace 4.1

2014-10-16 Thread Andrea Schweer
Hi Keir,

On 16/10/14 16:37, Keir Vaughan-Taylor wrote:
 Still Can't get the Solr stats to work.
 Eliminating items without handles made no difference.

 One problem that might be related is something web based.
 A recommended test is to run:

 wget http://127.0.0.1/solr/statistics/select?q=*:*

 and I get

 --2014-10-16 14:30:20--  http://127.0.0.1/solr/statistics/select?q=*:*
 Connecting to 127.0.0.1:80... connected.
 HTTP request sent, awaiting response... 500 Internal Server Error
 2014-10-16 14:30:20 ERROR 500: Internal Server Error.

Sorry if this has already been covered, I haven't had time to follow
this list lately. Have you looked through your log files for a stack
trace when the 500 error happens? catalina.out (in /var/log/tomcat6 on
my RHEL6 box) or the solr.log file in the DSpace log directory is where
I'd look.

cheers,
Andrea

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Re: [Dspace-tech] metadata multi item

2014-09-11 Thread Andrea Schweer
Hi Keir,

On 12/09/14 14:27, Keir Vaughan-Taylor wrote:
 Is there a way from the SQL to tell if any metadata field is permitted
 to have multiple entries of not?

No, not from the database. Strictly speaking, all fields are permitted
to be repeating; once an item is live, a DSpace admin (or more
generally, anyone with the appropriate permissions) can add as many
metadata values as they like for any metadata field. Single values (and
for that matter, mandatory fields) are enforced only during DSpace item
submission and when editing metadata during the review workflow. These
mechanisms take their information from the input-forms.xml file and this
is the only spot where you can find this information.

cheers,
Andrea

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