Re: problems with register.csh

Hi Nick, This might be occuring because you have a newer version of mri_convert that does not support the -raw flag. You could use an older version with register.csh or try using mri_motion_correct2 (i think that is the name). The latter works really well, but you will need to install all of the

Re: trouble converting to COR, can't stat ??

Hi Scott, What version of freesurfer are you using? brian - Original Message - From: Scott Laurence Fairhall [EMAIL PROTECTED] To: [EMAIL PROTECTED] Sent: Tuesday, October 01, 2002 11:20 PM Subject: trouble converting to COR, can't stat ?? Hello, I'm probably doing something

Re: mri_surfglm!!!

Hi Arvid, I did not find a correction for that problem yet. mris_convert may not be causing the problem, because I obtained the same result with an older version of it. Maybe something went wrong in the make final surfaces step. I am still looking for the source of the mismatch between the white

cortical thickness and between groups analyses

n" in the AFNI controller, it overlays the thickness values onto the "master" anatomical. It is misaligned and 3dUndump does not like decimals and negatives so you end up with only one quadrant of data, but It still looks cool! Thanks for all of your help. brian ***

contrast and brightness

Brian C. Schweinsburg UCSDPhone: 858.642.3736Fax: 858.552.7432

Re: contrast and brightness

Brian C. Schweinsburg UCSD Phone: 858.642.3736 Fax: 858.552.7432 -- Evelina

cortical thickness-ROI analysis

What is the best way to extract ROI information from cortical thickness data? For instance, I would be interested in obtaining thickness data for "prefrontal" cortex to compare patient group X to a group ofcontrols. My approach thus far has been to cut a prefrontal surface and flatten,