MNI space in freesurfer

it into a new space? Or, is there a particular reason why MNI normalization occurs midstream in the freesurfer process? Thanks, Tim Souza -- Timothy Souza Brown University Department of Neuroscience [EMAIL PROTECTED] ph: 401-863-1258 fax: 401-863-1074

problem using register.csh

by register.csh so that I may work-around this step via shell scripting. thanks in advance, Tim Souza -- Timothy Souza Brown University Department of Neuroscience [EMAIL PROTECTED] ph: 401-863-1258 fax: 401-863-1074

Installing MNI registration utilities

instuctions, or point me to the appropriate documentation, to install the MNI tools utility post-Freesurfer installation? In the FreeSurferDefs.csh setup file, I currently have the env variable setenv NO_MINC as well. Thanks, Tm Souza -- Timothy Souza Brown University Department

Re: Installing MNI registration utilities

for automated registration) or mri_motion_correct -o . -i 001 -i 002 -i 003 (depending on your version) If it all works, then freesurfer could find your MNI tools. Good luck. brian - Original Message - From: Timothy Souza [EMAIL PROTECTED] To: [EMAIL PROTECTED] Sent: Thursday, October

Re: Installing MNI registration utilities

, average152_8_mask.mnc, average152_headmask.mnc) are in the mni_autoreg directory or wherever you store your model. good luck. brian On Thu, 2002-10-03 at 13:32, Timothy Souza wrote: Brian, Thanks for the advice, I'll give it a shot. Out of curiosity, can MNI tools use the MNI average152 template dataset