Hi all,
Just for clarification sake, when people in the Freesurfer community refer
to MNI tools, is this actually a reference to the MNI_Autoreg utility?
I have installed netcdf 3.5, but wasn't able to find a utility that is
actually called MNI tools at www.bic.mni.mcgill.ca. Also, on the
Hi Tim,
First download netcdf 3.5 and install it. I think there is an rpm for it
for some distributions on www.rpmfind.net. That makes it easier because
you will not have to compile it (not that there is anything wrong with
compiling!). Compile the latest version of MNI tools. Usually the
Brian,
Thanks for the advice, I'll give it a shot. Out of curiosity, can MNI
tools use the MNI average152 template dataset instead of the MNI average
305? We had been using the MNI_152 template in another normalization scheme
we had worked out using flirt in FSL.
Thanks,
Tim
Hi Tim,
First
Tim,
When using mritotal to fit a dataset, you can specify -model and use the
base name average152. make sure average152 and its various datasets
(average152_16_blur.mnc, average152_8_blur.mnc, average152_8_dxyz.mnc,
average152_16_mask.mnc, average152_8_mask.mnc, average152_headmask.mnc)
are in
