It should work if you skip the last step and use the dlabel file.
Peace,
Matt.
From: Xavier Guell Paradis >
Date: Wednesday, August 9, 2017 at 9:43 AM
To: Timothy Coalson >, Matt Glasser
You need to have a dtseries (or dconn) file open before you can see any
kind of connectivity. If you only have the labels/rois open, how do you
expect it to figure out connectivity information?
Note that we only have options for averaging things inside a label, the ROI
file will not be useful in
Indeed the conversion from FreeSurfer annot format to GIFTI label format using
FreeSurfer’s mris_convert does not preserve the probabilities (instead coloring
every vertex with non-zero probability as a label). Really though, FreeSurfer
only provides those labels on individual subjects as a
Dear Matt,
Thank you for your reply. I have realized that a very curious thing happens:
- If I open the dlabel file and right-click the cluster in wb_view, I do not
see any option
- If I open the dscalar file and right-click the cluster in wb_view, I do not
see any option
- If I open the dlabel
Dear Tim,
Thank you for your reply
I have made sure that I have the group .dconn file opened, and I can see that
it is correctly opened because I can see connectivity when I click on any
structure.
However, I still have the same problem: I do not see the option of "Show Cifti
Connectivity" when
Dear Tim and Matt,
Thank you very much for your reply.
I tried -volume-label-import, followed by -cifti-create-label, followed by
-cifti-all-labels-to-rois.
After this, when I right-click the cluster in wb_view, I see the option "Show
Data/Time Series Graph For Parcel [my cluster]" but I do not