Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Glasser, Matthew
It should work if you skip the last step and use the dlabel file. Peace, Matt. From: Xavier Guell Paradis > Date: Wednesday, August 9, 2017 at 9:43 AM To: Timothy Coalson >, Matt Glasser

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Timothy Coalson
You need to have a dtseries (or dconn) file open before you can see any kind of connectivity. If you only have the labels/rois open, how do you expect it to figure out connectivity information? Note that we only have options for averaging things inside a label, the ROI file will not be useful in

Re: [HCP-Users] [SPAM] Brodmann area maps

2017-08-09 Thread Glasser, Matthew
Indeed the conversion from FreeSurfer annot format to GIFTI label format using FreeSurfer’s mris_convert does not preserve the probabilities (instead coloring every vertex with non-zero probability as a label). Really though, FreeSurfer only provides those labels on individual subjects as a

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
Dear Matt, Thank you for your reply. I have realized that a very curious thing happens: - If I open the dlabel file and right-click the cluster in wb_view, I do not see any option - If I open the dscalar file and right-click the cluster in wb_view, I do not see any option - If I open the dlabel

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
Dear Tim, Thank you for your reply I have made sure that I have the group .dconn file opened, and I can see that it is correctly opened because I can see connectivity when I click on any structure. However, I still have the same problem: I do not see the option of "Show Cifti Connectivity" when

Re: [HCP-Users] How can I convert subcortical nifti files to dlabel files?

2017-08-09 Thread Xavier Guell Paradis
Dear Tim and Matt, Thank you very much for your reply. I tried -volume-label-import, followed by -cifti-create-label, followed by -cifti-all-labels-to-rois. After this, when I right-click the cluster in wb_view, I see the option "Show Data/Time Series Graph For Parcel [my cluster]" but I do not