[HCP-Users] 7T (full resolution structural) data download

2016-07-27 Thread Yeun Kim
Hello, I would like to download some 7T structural data from HCP (at full resolution). Are there any available? Thank you, Yeun Kim ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp

[HCP-Users] Diffusion Preprocessing

2016-11-10 Thread Yeun Kim
Hi, For the HCP diffusion processing pipeline, do you have the option to use the single-band reference images for registration purposes? Thank you in advance, Yeun ___ HCP-Users mailing list HCP-Users@humanconnectome.org

Re: [HCP-Users] task fMRI analysis

2016-11-29 Thread Yeun Kim
chiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 <(314)%20747-6173> > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Yeun Kim < > yeun...@gmail.com> > Date: Tuesday, November 29, 2016 at 12:0

[HCP-Users] task fMRI analysis

2016-11-29 Thread Yeun Kim
Hi, For task fMRI analysis in the minimal processing pipeline, do I need the separated outputs of fmri data of each phase encoding direction? (i.e. tFMRI_EMOTION_LR_* and tFMRI_EMOTION_RL_*). I just want to perform level one analysis. Thank you, Yeun

Re: [HCP-Users] diffusion data merge pipeline

2017-07-17 Thread Yeun Kim
rs-boun...@humanconnectome.org> on behalf of Yeun Kim < > yeun...@gmail.com> > Date: Monday, July 17, 2017 at 12:56 PM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] diffusion data merge pipeline > > Hi, > &

Re: [HCP-Users] diffusion data merge pipeline

2017-07-17 Thread Yeun Kim
cess(target=stage_func).start() On Mon, Jul 17, 2017 at 11:15 AM, Glasser, Matthew <glass...@wustl.edu> wrote: > The pipeline is capable of doing the merge for you if you want. Can you > post how you called the diffusion pipeline? > > Peace, > > Matt. > > From: Yeun K

Re: [HCP-Users] diffusion data merge pipeline

2017-07-18 Thread Yeun Kim
ry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 <(314)%20747-6173> > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Yeun Kim < > yeun...@gmail.com> > Date: Monday, July 17, 2017 at 1:32 PM

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-21 Thread Yeun Kim
ix_multi_run might be helpful. > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Thursday, July 20, 2017 at 4:33 PM > > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re:

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-21 Thread Yeun Kim
To follow up, which script should I work with? hcp_fix_multi_run or hcp_fix_multi_run.original? Thanks, Yeun On Fri, Jul 21, 2017 at 11:13 AM, Yeun Kim <yeun...@gmail.com> wrote: > Hi Matt, > > We're a Depression-HCP site, using nearly identical sequences as ongoing > HCP Agin

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-26 Thread Yeun Kim
; other may have modifications specific to the HCP computer system. I’ve > CCed Tim Brown who made the additional changes in case he has further > comment. > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Friday, July 21, 2017 at 1:38 PM > > To: Matt Glasser

[HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Yeun Kim
Hi, I cannot find the modified version of melodic in http://www.fmrib.ox.ac.uk/~steve/ftp/fix.tar.gz. Where is the modified melodic? Thank you, Yeun ___ HCP-Users mailing list HCP-Users@humanconnectome.org

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Yeun Kim
<glass...@wustl.edu> wrote: > What is this in reference to? > > Peace, > > Matt. > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Yeun Kim < > yeun...@gmail.com> > Date: Wednesday, July 19, 2017 at 7:04 PM > To: "hcp-users@humanconne

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-19 Thread Yeun Kim
, Matthew <glass...@wustl.edu> wrote: > I wouldn’t worry about that. Those modifications should be in the latest > FSL release. > > Peace, > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Wednesday, July 19, 2017 at 7:14 PM > To: Matt Gla

Re: [HCP-Users] diffusion data merge pipeline

2017-07-19 Thread Yeun Kim
Don't recommend the parallel processing or the eddy_cuda? On Tue, Jul 18, 2017 at 2:13 PM, Glasser, Matthew <glass...@wustl.edu> wrote: > We really don’t recommend you do that. I would ask about the eddy_cuda on > the FSL or neurodebian lists. > > Peace, > > Matt.

Re: [HCP-Users] hcp_fix.for_fix1.06a

2017-07-20 Thread Yeun Kim
Peace, > > Matt. > > From: Yeun Kim <yeun...@gmail.com> > Date: Wednesday, July 19, 2017 at 7:20 PM > > To: Matt Glasser <glass...@wustl.edu> > Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] hcp_fix.for