Hi Max
Have you explored the "connect" command?
>From your last description, I think that might do what you want.
It's easy to select atom pairs by distance, and then you could "reconnect"
them and apply color and thickness of bond
https://chemapps.stolaf.edu/jmol/docs/#connect
·
Dr. Angel
Am 19.01.17 um 05:26 schrieb Max Pinheiro Jr:
> Hi Bob,
>
> The problem that still persist is how to use the values bond lengths to
> assign the colors for each bond. I included a new variable to get the
> bond length inside the for loop: y=x.bonds.length. However, I think the
> variable colors[ ]
Yes, Max, there is a very simple way to do this. If you have a color scheme
in mind, the color() function is what you want:
*x = color(schemeName, min, max, value)*
for example:
$ x = color("rgb",0,2,1.5)
$ print x
{0.0 255.0 255.0}
bmin = {*}.bonds.length.min
bmax = {*}.bonds.length.max
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