ideas?
Thanks!
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
?
Thanks.
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
(max)
atoms out.
Much TIA,
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
script is as in the previous message.
As of now, I'll try smaller hash_max's and also if that's not good,
reduce the size of my circular lipid bilayer.
Many thanks for the quick response!
Regards,
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http
In the sample png above, I would like the light grey regions to be
transparent. It also seems as if the quality of the render has gotten
much poorer. Any ideas?
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
tangible 3-5 years ago.
Thanks for the suggestion!
Regards,
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
short:
if you haven't check out 'mplayer/mencoder' with the DiVX codec, I
think it can do what you want.
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
Gabriel,
I've managed to render scenes for a movie that had well over 100,000
atoms. For stills, I've rendered a nucleocapsid of over 292,000 atoms.
So, I'm sure it can be done.
I think the real large render only took a few minutes as well.
-- Jason
On Wed, 2004-06-30 at 22:47,
PyMol hints or tips to the wiki if you have one.
-- Jason
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
PyMol Wiki:: http://www.pymolwiki.org
Vertrees dot Org :: http://www.vertrees.org
,
praedor
--
Jason Vertrees
BSCB Graduate Student @ UTMB, Galveston
javer...@utmb.edu :: http://www.bscb.utmb.edu
PyMol Wiki:: http://www.pymolwiki.org
Vertrees dot Org :: http://www.vertrees.org
improvement page and leave a comment
(http://www.pymolwiki.org/index.php/Improvements).
Cheers,
-- Jason
--
Jason Vertrees
javer...@utmb.edu
or whenever I get the
C/C++ code properly plugged into PyMol. (The C++ code on my machine aligns
two 400+ residue proteins in about 0.250 seconds; the Python code for 167
residue proteins, 35 seconds!)
Please forward bugs/comments to me, address below.
Cheers,
-- Jason
--
Jason Vertrees
javer
).
Cheers,
-- J
--
Jason Vertrees
http://vertrees.org/
http://pymolwiki.org/
http://best.utmb.edu/
,
--
Jason Vertrees (javer...@utmb.edu)
http://vertrees.org/ -- HOME
http://pymolwiki.org/ -- PyMol Wiki
http://best.utmb.edu/ -- Protein Science
http://www.andeanimporters.com/ -- Biz.
ligands
from different PDBs?
Thanks in advance.
Feng.
--
Jason Vertrees (javer...@utmb.edu)
http://vertrees.org/ -- HOME
http://pymolwiki.org/ -- PyMol Wiki
http://best.utmb.edu/ -- Protein Science
http://www.andeanimporters.com/ -- Biz.
installed the captcha image for
automated spam protection. I will leave the wiki open like this until
spammers prove the change unwise.
-- Jason
--
Jason Vertrees
http://vertrees.org/
http://pymolwiki.org/
http://best.utmb.edu/
could solve the problem entirely, but would need some
modification to do so.
Sorry if I confused anyone.
References if needed:
http://www.pymolwiki.org/index.php/Kabsch
http://www.pymolwiki.org/index.php/Cealign
Regards,
-- Jason
--
Jason Vertrees
http://vertrees.org/
http://pymolwiki.org
reports that
it does indeed work. Details are also on the Wiki.
Thanks,
-- Jason
--
Jason Vertrees (javer...@utmb.edu)
Doctoral Student
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
Galveston, Texas
http://www.best.utmb.edu/
http
freely given away for many prying eyes, this bug may have never been
caught.
Thanks again, Dan.
Regards,
-- Jason
--
Jason Vertrees (javer...@utmb.edu)
http://vertrees.org/ -- HOME
http://pymolwiki.org/ -- PyMol Wiki
http://best.utmb.edu/ -- Protein Science
http://www.andeanimporters.com
from Robert Campbell.
A lot of useful scripts are posted on his website:
http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/
Cheers,
Greg
--
Jason Vertrees (javer...@utmb.edu)
Doctoral Student
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
://www.pymolwiki.org/index.php/Cealign#Version_0.6
As usual, please forward bugs/issues to me, or if it interests the list, here.
Cheers,
-- Jason
--
Jason Vertrees (javer...@utmb.edu)
Doctoral Student
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
/Cartoon_transparency
-- Jason
--
Jason Vertrees (javer...@utmb.edu)
Doctoral Candidate
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
Galveston, Texas
http://www.best.utmb.edu/
http://www.pymolwiki.org/
of orthogonal vectors.
Thanks! and all the best,
--Buz
--
Jason Vertrees (javer...@utmb.edu)
Doctoral Candidate
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
Galveston, Texas
http://www.best.utmb.edu/
http://www.pymolwiki.org/
, please let us know how we can improve the wiki to better serve
the community. Each wiki page has its own discussion page for comments.
Just add your comments or feel free to update the content as you see
appropriate.
-- Jason
--
Jason Vertrees (javer...@{utmb,cs.dartmouth}.edu)
Doctoral
you. That's cool! They even have a
video. The PyMOLWiki link is --
http://www.pymolwiki.org/index.php/ImmersiveViz
I also hear that the code will be available soon.
-- Jason
--
Jason Vertrees (javer...@{utmb,cs.dartmouth}.edu)
Doctoral Candidate
Biophysical, Structural Computational
cool idea, with lots of potential for cool extensions.
-- Jason
--
Jason Vertrees (javer...@{utmb,cs.dartmouth}.edu)
Doctoral Candidate
Biophysical, Structural Computational Biology Program
University of Texas Medical Branch
Galveston, Texas
http://www.best.utmb.edu/
http://www.pymolwiki.org/
split_states:
# (1) load the CE result file
load /path/to/ceResults.txt
# (2) call split_states to show the other molecule
split_states ceResults
HTH,
-- Jason
--
Jason Vertrees, PhD (javer...@{utmb,cs.dartmouth}.edu)
http://www.best.utmb.edu/
http://www.pymolwiki.org/
things such as trying to get it to b-factor like
position but haven't been successful. Is there any way I can get the data
to be shown in pdb with various colors representing low/high perturbation
in chemical shifts?
Ankit
--
Jason Vertrees, PhD
Dartmouth: j...@cs.dartmouth.edu (new)
UTMB
/Cealign
Super -- http://www.pymolwiki.org/index.php/Super
optAlign-- http://www.pymolwiki.org/index.php/Kabsch
HTH,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
* 115 settings documented
* 155 commands documented
Last week alone we had about 1000 (non-bot) visitors that checked out
about 6,000 pages.
(**) == statistics with bots
(*) == statistics w/o bots
Cheers,
-- Jason Vertrees
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
# these two commands do the same thing, in this example
loadDir nonBinders/*, *.pdb, group=nonBind
loadDir nonBinders/classC, *.pdb, group=nonBind
Cheers!
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki
) )
cmd.as(cartoon)
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
Jason Vertrees, PhD
Boston U. -- jas...@bu.edu
Dartmouth -- j...@cs.dartmouth.edu
?
Best regards
Magnus Franzmann
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
make the wiki a better
place for us all. Follow the link to take the survey:
http://www.surveymonkey.com/s.aspx?sm=NPHgdFVCWobsztKtjr5s5g_3d_3d
You can also access the survey from the PyMOLWiki Main Page.
Cheers,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
).
Cheers thanks again,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
: +49 2461 61 5385
--
Jason Vertrees, PhD
Boston U. -- jas...@bu.edu
Dartmouth -- j...@cs.dartmouth.edu
--
Register Now Save for Velocity, the Web Performance Operations
Conference from O'Reilly Media. Velocity features
part before this'll become widely used for the wiki.
Thanks,
-- Jason
--
Jason Vertrees, PhD
Boston U. -- jas...@bu.edu
Dartmouth -- j...@cs.dartmouth.edu
--
The NEW KODAK i700 Series Scanners deliver under ANY
, but this should get you
going.
HTH,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
--
OpenSolaris 2009.06 is a cutting edge
()
exposed.sort()
print Solvent exposed residues (chain,residue):
for res in exposed: print res
select exposed, query in tmp
dele tmp
# visual confirmation
color white
color red, byres exposed
set sphere_solvent
as spheres
orient
Cheers,
Warren
--
Jason
()
exposed.sort()
print Solvent exposed residues (chain,residue):
for res in exposed: print res
select exposed, query in tmp
dele tmp
# visual confirmation
color white
color red, byres exposed
set sphere_solvent
as spheres
orient
Cheers,
Warren
--
Jason
have all the information you need.
Cheers,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org/
--
Are you an open source
-stealing
or slow GUI updates, but it did fix the blanking data.
HTH,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org
://www.pymolwiki.org/index.php/InterfaceResidues
I hope someone finds this useful.
Cheers,
-- Jason
--
Jason Vertrees, PhD
Dartmouth College : j...@cs.dartmouth.edu
Boston University : jas...@bu.edu
PyMOLWiki : http://www.pymolwiki.org
/Texture_fonts
Cheers,
-- Jason
--
Jason Vertrees, PhD
Boston U. -- jas...@bu.edu
Dartmouth -- j...@cs.dartmouth.edu
--
___
PyMOL-users mailing list (PyMOL-users
and the script
does the math for you.
You can find the code on the PyMOLWiki:
http://www.pymolwiki.org/index.php/CgoCircle
Hope someone finds this useful,
-- Jason
--
Jason Vertrees, PhD
Boston U. -- jas...@bu.edu
Dartmouth -- j...@cs.dartmouth.edu
the cartoon of the backbone also which i dnt want.
Regards,
Bala
--
Jason Vertrees, PhD
PyMOL -- http://www.pymol.org/
PyMOLWiki -- http://www.pymolwiki.org/
--
Let Crystal Reports handle the reporting - Free Crystal
): raise QuietException
return r
Any explanation of the bug, or an effective workaround would be greatly
appreciated.
Thanks,
Stuart Ballard
Dept. of Biochemistry
UW-Madison
--
Jason Vertrees, PhD
PyMOL -- http://www.pymol.org/
PyMOLWiki -- http://www.pymolwiki.org
/bin/gcc-4.2
before installing or it will fail. But, make sure you reset it to
gcc-4.2 after installing PyMOL or other installs might complain.
If you had problems with the Tk window and openGL window fighting for
focus, this has finally been fixed!
Cheers,
-- Jason
--
Jason Vertrees, PhD
. This could be just the loops, or interface residues
defined with the script from Jason Vertrees.
I use iterate for this and it works well enough, however I would like
to be able to make:
1. a non-redundant list (e.g. residue 12 will only appear once)
2. adjacent numbers into ranges (e.g
. of Biochemistry
University of Wisconsin-Madison
-- Jason
--
Jason Vertrees, PhD
(e) jason.vertr...@gmail.com
http://www.pymol.org/ -- PyMOL
http://www.pymolwiki.org/ -- PyMOLWiki
--
Come build with us! The BlackBerryreg
to the wiki.
Cheers,
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Come build with us! The BlackBerry(R) Developer Conference in SF, CA
is the only developer event you need to attend this year. Jumpstart your
(query)
cmd.delete(template)
Hope this helps,
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Come build with us! The BlackBerry(R) Developer Conference in SF, CA
is the only developer event
know if it
works for you.
-- J
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
2009/10/31 Thomas Evangelidis te8...@mbg.duth.gr:
Thomas,
The PyMOL UI runs asynchronously. I think you are deleting your PDB
files before they can be aligned. I made a couple changes in your
script
Electrostatics, for 1cbs
util.protein_vacuum_esp(1cbs)
util.protein_vacuum_esp(1hmt)
# turn on grid mode
set grid_mode, 1
# put all 1cbs stuff into slot 1
set grid_slot, 1, 1cbs*
# put all 1hmt stuff into slot 2
set grid_slot, 2, 1hmt*
Hope that helps,
Jason Vertrees, PhD
PyMOLWiki -- http
, and ask you to please bear with us while we
plan for PyMOL's future.
Thanks,
Elizabeth Pehrson (Warren's wife)
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Let Crystal Reports handle the reporting - Free
and will continue to grow, there is no
doubt about that.
HTH,
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day
trial
)
cmd.load(pdbDir + loadName, loadName)
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Tue, Nov 10, 2009 at 1:08 PM, Tsjerk Wassenaar tsje...@gmail.com wrote:
Hi Matt,
Well, then you're in for some nasty debugging. That will probably end
with you slapping yourself
to the mailing list and PyMOLWiki.
While there will be hiccups along the way, we again wanted to reassure
you that we are here, we are working, and we look forward to PyMOL
growing into the software that Warren knew it could be.
Sincerely,
Beth Pehrson (Warren’s wife)
DeLano Scientific LLC
--
Jason Vertrees
it forward as long as I
can. Warren was peerless, but I will do my best to keep the ball
rolling.
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Let Crystal Reports handle the reporting - Free Crystal
widget to find things on the wiki
The main complaint on the wiki is searching. Please let me know if
these changes are helping or not.
Thanks,
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
--
Let
A quick note on sending covers. When sending me a cover, please:
* send me a scanned copy (please do not just copy the image from the
journal's website, we don't want to break copyright laws);
* send me the title and any other information/links you want posted.
Thanks,
-- J
Jason Vertrees
object as a multistate object. Save the
output to a mutli-state PDB with:
save myConf.pdb, m_out, 0
then use that in your movies.
HTH,
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Fri, Nov 20, 2009 at 2:08 PM, Michael Zimmermann
micha...@iastate.edu wrote:
one
Stephen,
openSuse Linux does not come with Pmw installed by default. Please
re-download and install Pmw. Let me know if it's something else.
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Fri, Nov 20, 2009 at 4:54 PM, Justin Lecher j.lec...@fz-juelich.de wrote
I realized I made a mistake. The proper import statement is:
from epymol import rigimol
This is shipped in the incentive build of 1.1r2.
-- Jaso
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Fri, Nov 20, 2009 at 2:50 PM, Huang, Xin h...@amgen.com wrote:
Thanks Jason
160 commands documented. Most PyMOL API commands
directly mirror their UI counterparts. For example,
save fileName.pdb, objName, state=0
would simply translate to
cmd.save( fileName.pdb, objName, state=0 );
Finally, welcome to PyMOL.
-- Jason
Jason Vertrees, PhD
PyMOLWiki -- http
this helps,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Thu, Nov 26, 2009 at 6:00 PM, Cun Zhang apzc2...@gmail.com wrote:
hi, Jason.
Thank you for your advice. I attach the pdb file at the end.
Cun Zhang
The script which is to delete the water molecules
) or a multi-state object.
Nice attention to detail,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Sun, Nov 29, 2009 at 9:50 PM, Robert Campbell
robert.campb...@queensu.ca wrote:
Hi Jason,
On Sun, 29 Nov 2009 12:29:08 -0500, Jason Vertrees jason.vertr...@gmail.com
wrote
FYI, that worked for me. I just copied the binary to /usr/local/lib.
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Mon, Nov 30, 2009 at 2:56 PM, Michael Lerner mgler...@gmail.com wrote:
Can you go to the Program Locations tab and find out which version of APBS
Hope this helps,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Tue, Dec 8, 2009 at 2:07 AM, saeid mirzaei smirzae...@yahoo.com wrote:
Hi everyone,
could some one tell me I can use Pymol for superimposing two protein or not
if so how can I use it?
Thanks
are shown in PyMOL. This
extension does require either a matching Python distribution that which
ships with PyMOL or that you compile PyMOL from source.
Thanks for the note,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Tue, Dec 8, 2009 at 11:12 AM, Michael
may have more biologically meaningful results with a server
made especially for this task.
Hope this helps,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Wed, Dec 9, 2009 at 5:57 PM, Kousik Kundu
kou...@informatik.uni-freiburg.de wrote:
Dear Sir,
I, Kousik
structure they retain the
bonding topology of the first structure. If you change any
intermediate state, then they all change.
Anyone else?
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Mon, Dec 14, 2009 at 11:30 AM, Nicolas Bock nicolasb...@gmail.com wrote:
Hello
JW,
To get the state of a multi-state system, do:
get state
or
get state, objectName
See http://pymolwiki.org/index.php/State for a starting portal to
other state-based info.
You can similarly set a state:
set state, stateNumber, object
Hope this helps,
-- Jason
--
Jason Vertrees, PhD
will be returned, too. So, if you
don't use special naming for your groups, they will run together with
other objects.
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Mon, Dec 21, 2009 at 6:45 PM, David Hall dwash59_2...@yahoo.com wrote:
How would someone get the list
helpful link:
http://www.pymolwiki.org/index.php/Category:Structure_Alignment
See: fit, optAlign, intra_fit_rms.
Hope this helps,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Tue, Dec 29, 2009 at 1:27 PM, Thomas Evangelidis te8...@mbg.duth.gr wrote:
Dear pymol users
this helps,
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Thu, Jan 7, 2010 at 7:16 AM, ilaria carlone
ilariacarl...@hotmail.com wrote:
Hi everyone!
I am using PyMOL for creating molecular surfaces (SAS), starting form a pdb
file. I have some problems with large proteins
Ilaria,
Which plugin are you trying to use? Also, please beware that scripts
and plugins are different and have different methods of install.
Lastly are you using PyMOL 0.99, 1.x?
-- Jason
--
Jason Vertrees, PhD
PyMOLWiki -- http://www.pymolwiki.org
On Fri, Jan 8, 2010 at 9:21 AM, ilaria
will now point
to pymol.org. If your favorite link is lost, please let me know ASAP,
but please give us some time to arrange this
I'm very excited for PyMOL and look forward to working with you all.
Regards,
-- Jason
--
Jason Vertrees, PhD
jason.vertr...@schrodinger.com
PyMOL Product Manager
the open-source community of PyMOL. Warren really enjoyed
working with the folks at Schrödinger, said Ms. Beth Pehrson, the
late Dr. DeLano's wife, I know this is what Warren wanted for PyMOL's
future.
-- Jason
--
Jason Vertrees, PhD
jason.vertr...@schrodinger.com
PyMOL Product Manager
Schrodinger
Michael,
I don't think this is possible with PyMOL. Distance measures are
calculated from objects.
-- Jason
--
Jason Vertrees, PhD
jason.vertr...@schrodinger.com
PyMOL Product Manager
Schrodinger, Inc.
On Fri, Jan 8, 2010 at 7:05 PM, Michael Zimmermann micha...@iastate.edu wrote:
Dear
Hey all,
Searching on the wiki should be fixed now. There were two errors that
our awesome BitGnome admin fixed. I did some simple testing and it
seemed to work just fine. Please let me know if you encounter any
problems.
Thanks,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
of PyMOL by Schrodinger (Thomas Stout)
2. PyMOL Schrodinger (Jason Vertrees)
3. Re: acquisition of PyMOL by Schrodinger (Jason Vertrees)
4. select atoms near electron density (Michael Zimmermann)
5. Re: select atoms near electron density (Jason Vertrees)
6. Re: select atoms near
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
--
This SF.Net email is sponsored by the Verizon Developer Community
Take advantage of Verizon's best
-
Quick question regarding this - I would like to do the inverse - that is,
show only the surface of interior pockets. So:
fetch 2hi4
run findSurfaceResidues.py
findSurfaceResidues (1phv), 0.5
flag ignore, exposed_RESULT
as surface, 2hi4
Yes?
Jed
Jason Vertrees wrote:
Hugues,
Here's
(and should work on 10.5). In the meantime if
you're on 10.4, please use 1.2r2. I have to reconfigure the build
environment to go back to 10.4.
Thanks!
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1
-users@lists.sourceforge.net
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
--
Throughout its 18-year history, RSA Conference consistently attracts
for
implementation.
Last, you're particularly passionate about your feature request, email
me directly and we can chat about it via phone/skype.
Thanks,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger
@lists.sourceforge.net
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
--
Throughout its 18-year history, RSA Conference consistently attracts
object name, to make it a multistate object.
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
--
Throughout its 18-year history, RSA
to be honest
but the benefits could be huge. A couple of problems could be solved
at once, such as integration into web pages or documents, mobile
devices, etc. without any plugins or Java stuff.
Interesting.
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e
feature enhancement
at some point in the recent past.
Cheers.
On 1/19/2010 11:26 PM, Jason Vertrees wrote:
PyMOLers,
We need to move forward on PyMOL development, so I'm collecting ideas
from all our users on what they most want in future versions of PyMOL.
We already have a page
PyMOLers,
I just want to quickly reiterate: PyMOL will still be supported on the
Mac--no need to worry. Even though other Schrodinger software doesn't
run on the Mac, PyMOL will.
MacPyMOL will live on.
Best,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e
level of undo. I predict this will be around
after we do some major refactoring--possibly in PyMOL 2.0. :-)
Thanks for your suggestions.
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
/pymol/__init__.py: if freemol_libpy not in sys.path:
modules/pymol/__init__.py: sys.path.append(freemol_libpy)
Hopefully this all helps.
-David
- Original Message
From: Maia Cherney ch...@ualberta.ca
To: Jason Vertrees jason.vertr
PyMOLers,
Just a quick note: if you're on the list and see a feature you like,
please reply to that email with a quick yea vote. It's even better
if you let us know why you like it. Silence regarding a feature only
down-weights its perceived importance.
Thanks,
-- Jason
--
Jason Vertrees
.
# ray trace the
png imageName.png ,22.5cm, 10cm, dpi=300
Food for thought,
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
help you out.
-- Jason
--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) jason.vertr...@schrodinger.com
(o) +1 (603) 374-7120
--
Throughout its 18-year history, RSA Conference consistently attracts
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