Re: [R] package ReadImages

2013-02-22 Thread PIKAL Petr
Hi -Original Message- From: r-help-boun...@r-project.org [mailto:r-help-bounces@r- project.org] On Behalf Of Prof Brian Ripley Sent: Friday, February 22, 2013 8:17 AM To: r-help@r-project.org Subject: Re: [R] package ReadImages On 22/02/2013 05:44, Greg Snow wrote: Some

Re: [R] package ReadImages

2013-02-22 Thread PIKAL Petr
simple, without direct possibility to transform from rgb to grayscale and normalisation. Anyway, I will give it a try. Petr From: Greg Snow [mailto:538...@gmail.com] Sent: Friday, February 22, 2013 6:45 AM To: PIKAL Petr Cc: r-help Subject: Re: [R] package ReadImages Some possibilities

Re: [R] package ReadImages

2013-02-22 Thread Greg Snow
will give it a try. ** ** Petr ** ** *From:* Greg Snow [mailto:538...@gmail.com] *Sent:* Friday, February 22, 2013 6:45 AM *To:* PIKAL Petr *Cc:* r-help *Subject:* Re: [R] package ReadImages ** ** Some possibilities: The EBImage package on Bioconductor; the jpeg and png

Re: [R] package ReadImages

2013-02-22 Thread John
Petr, Another program that may be useful is ImageJ which has a great many useful analytic plugins. The program is written in Java and it supports a good many different image file formats. You should also be able to use Octave to normalize an image. JWDougherty

[R] package ReadImages

2013-02-21 Thread PIKAL Petr
Dear all I prepared some image processing routine which depended on package ReadImages. Basically I imported image to R, changed rgb to grayscale, normalised an image made some selections and changed to image by imagematrix. Recently I learned that this package was removed from CRAN and can

Re: [R] package ReadImages

2013-02-21 Thread Greg Snow
Some possibilities: The EBImage package on Bioconductor; the jpeg and png packages read jpeg and png images. On Thu, Feb 21, 2013 at 8:26 AM, PIKAL Petr petr.pi...@precheza.cz wrote: Dear all I prepared some image processing routine which depended on package ReadImages. Basically I

Re: [R] package ReadImages

2013-02-21 Thread Prof Brian Ripley
On 22/02/2013 05:44, Greg Snow wrote: Some possibilities: The EBImage package on Bioconductor; the jpeg and png packages read jpeg and png images. Almost everyone using ReadImages was using it to read TIFF images, which package tiff can do. See the 'Data Import/Export Manual',

[R] Any R package to do the harmonic analysis

2013-02-19 Thread Janesh Devkota
Hi R Users, I was wondering if there is any R package available to do the harmonic analysis of tide. Any suggestion is highly appreciated. Janesh [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https

Re: [R] Any R package to do the harmonic analysis

2013-02-19 Thread Steve Taylor
Subject: [R] Any R package to do the harmonic analysis Hi R Users, I was wondering if there is any R package available to do the harmonic analysis of tide. Any suggestion is highly appreciated. Janesh [[alternative HTML version deleted

[R] FW: Best R package for Finite Mixture Models or Latent Class Models

2013-02-18 Thread R Project
Can anyone point me to a comparision of the various packages avaliable to do Finite Mixture Models or Latent Class Models in R. As ever my googling only produce papers on specific packages or implementations. I am looking of a considered comparision that criticlaly compares them.

Re: [R] First R package, advice

2013-02-09 Thread ivo welch
I am still researching my best choices. IMHO, every programming and every typesetting language ever invented should have had a compatible basic escape sequence built in. simple. just compatible with one another. something like a specific escape sequence on the first column, like #%@@==R

Re: [R] First R package, advice

2013-02-08 Thread Terry Therneau
On 02/07/2013 05:00 AM, r-help-requ...@r-project.org wrote: I'd argue that there's an important distinction between documenting a function (how to use it) vs. documenting an algorithm (how it works). I think noweb can work well for describing how something works, but it's not so good for

Re: [R] First R Package --- Advice?

2013-02-06 Thread Duncan Murdoch
On 13-02-05 7:43 PM, ivo welch wrote: Dear R experts--- after many years, I am planning to give in and write my first R package. I want to combine my collection of collected useful utility routines. as my guide, I am planning to use Friedrich Leisch's Creating R Packages: A Tutorial from Sep

Re: [R] First R Package --- Advice?

2013-02-06 Thread Hadley Wickham
Other people have recommended Roxygen, but honestly I haven't seen a package documented with Roxygen where the documentation was adequate. It looks as though it's great to get initial documentation created, but does not appear to encourage followup. I don't think that's a problem with roxygen

Re: [R] First R Package --- Advice?

2013-02-06 Thread Martin Morgan
On 02/06/2013 03:31 AM, Duncan Murdoch wrote: On 13-02-05 7:43 PM, ivo welch wrote: Dear R experts--- after many years, I am planning to give in and write my first R package. I want to combine my collection of collected useful utility routines. as my guide, I am planning to use Friedrich

Re: [R] First R Package --- Advice?

2013-02-06 Thread Hadley Wickham
I have heard of people using noweb to do this, but I can't point to any examples. I'd actually recommend against it. Good documentation files don't make good source files. the compiler package in base R is, apparently, developed using noweb

Re: [R] First R Package --- Advice?

2013-02-06 Thread Duncan Murdoch
On 06/02/2013 9:44 AM, Martin Morgan wrote: On 02/06/2013 03:31 AM, Duncan Murdoch wrote: On 13-02-05 7:43 PM, ivo welch wrote: Dear R experts--- after many years, I am planning to give in and write my first R package. I want to combine my collection of collected useful utility routines

Re: [R] First R Package --- Advice?

2013-02-06 Thread Duncan Murdoch
On 06/02/2013 9:49 AM, Hadley Wickham wrote: I have heard of people using noweb to do this, but I can't point to any examples. I'd actually recommend against it. Good documentation files don't make good source files. the compiler package in base R is, apparently, developed using noweb

Re: [R] First R Package --- Advice?

2013-02-06 Thread ivo welch
a nice aspect about roxygen (and perl pod) is that it compiles into the standard .Rd files. it's not a substitute, but a complement tool. it may also make a good start for docs when one starts writing code, and be eventually yanked out in favor of direct changes in the .Rd files that it has

[R] First R Package --- Advice?

2013-02-05 Thread ivo welch
Dear R experts--- after many years, I am planning to give in and write my first R package. I want to combine my collection of collected useful utility routines. as my guide, I am planning to use Friedrich Leisch's Creating R Packages: A Tutorial from Sep 2009. Is there a newer or better

Re: [R] First R Package --- Advice?

2013-02-05 Thread Yihui Xie
-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Feb 5, 2013 at 6:43 PM, ivo welch ivo.we...@anderson.ucla.edu wrote: Dear R experts--- after many years, I am planning to give in and write my first R package. I want

Re: [R] First R Package --- Advice?

2013-02-05 Thread ivo welch
...@anderson.ucla.edu wrote: Dear R experts--- after many years, I am planning to give in and write my first R package. I want to combine my collection of collected useful utility routines. as my guide, I am planning to use Friedrich Leisch's Creating R Packages: A Tutorial from Sep 2009

Re: [R] First R Package --- Advice?

2013-02-05 Thread ivo welch
actually, I may have found what I was looking for in https://github.com/hadley/devtools/wiki/Philosophy --- Ivo Welch (ivo.we...@gmail.com) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting

Re: [R] First R Package --- Advice?

2013-02-05 Thread Yihui Xie
I have a minimal package here based on roxygen2: https://github.com/yihui/rmini Regards, Yihui -- Yihui Xie xieyi...@gmail.com Phone: 515-294-2465 Web: http://yihui.name Department of Statistics, Iowa State University 2215 Snedecor Hall, Ames, IA On Tue, Feb 5, 2013 at 11:49 PM, ivo welch

[R] package installation error in Mac OS X

2013-02-03 Thread londonphd
Hi, I installed R in Mac OS X, and trying to installa package. R is not allowing me to install the meboot package. Below is the exact message I got from R: installation of package ‘meboot’ had non-zero exit status trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/meboot_1.1-5.tar.gz'

Re: [R] package installation error in Mac OS X

2013-02-03 Thread Pascal Oettli
Hi, Did you install the Xcode Developer Tools on your machine? HTH, Pascal Le 04/02/2013 03:14, londonphd a écrit : Hi, I installed R in Mac OS X, and trying to installa package. R is not allowing me to install the meboot package. Below is the exact message I got from R: installation of

Re: [R] Package name

2013-01-31 Thread Marcio Pupin Mello
I'm not sure, but would recommend not to. -- Marcio www.dsr.inpe.br/~mello On 31/01/2013 04:26, Ortiz, John wrote: Dear list, Can I use a character to set the name of a R package? like this (-) for example (sdp-R) Thanks, John __ R-help@r

Re: [R] Package name

2013-01-31 Thread Duncan Murdoch
On 13-01-31 1:26 AM, Ortiz, John wrote: Dear list, Can I use a character to set the name of a R package? like this (-) for example (sdp-R) I can't quite parse your question, but I think the answer is in the Writing R Extensions manual, section 1.1 Package Structure. Duncan Murdoch

Re: [R] Package name

2013-01-31 Thread Uwe Ligges
On 31.01.2013 14:12, Duncan Murdoch wrote: On 13-01-31 1:26 AM, Ortiz, John wrote: Dear list, Can I use a character to set the name of a R package? like this (-) for example (sdp-R) I can't quite parse your question, but I think the answer is in the Writing R Extensions manual, section

[R] Package name

2013-01-30 Thread Ortiz, John
Dear list, Can I use a character to set the name of a R package? like this (-) for example (sdp-R) Thanks, John __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R

[R] Package parallel left orphan processes, how to clean-up?

2013-01-29 Thread Bin Ye
processes, they will cause problem. I was qlogin to SGE cluster node to run R. From our administrator, I heard that at least another R package zinba, which based on parallel too, met the same problem. I tried to use functions from multicore, such as kill(children()) and collect(), they just return NULL

[R] Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

2013-01-27 Thread Fabrice Tourre
Dear list, When I use VennDiagram package, I got a error as follow: venn.plot - draw.pairwise.venn( area1 = 3186, area2 = 325, cross.area = 5880); Error in draw.pairwise.venn(area1 = 3186, area2 = 325, cross.area = 588) : Impossible: cross section area too large. Does anyone have

[R] Package for multi-dimensional terminal value ODE solver

2013-01-27 Thread Robert A'gata
Hi, I did some googling. I found multiple ODE solver packages. But I am wondering if there is any terminal value ODE solver (linear case) for multi-dimension case or not? I have not come across any. Any guidance would be appreciated. Robert [[alternative HTML version deleted]]

Re: [R] Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

2013-01-27 Thread Ben Bolker
Fabrice Tourre fabrice.ciup at gmail.com writes: Dear list, When I use VennDiagram package, I got a error as follow: venn.plot - draw.pairwise.venn( area1 = 3186, area2 = 325, cross.area = 5880); Error in draw.pairwise.venn(area1 = 3186, area2 = 325, cross.area = 588) :

Re: [R] Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

2013-01-27 Thread Ted Harding
On 27-Jan-2013 23:50:57 Ben Bolker wrote: Fabrice Tourre fabrice.ciup at gmail.com writes: Dear list, When I use VennDiagram package, I got a error as follow: venn.plot - draw.pairwise.venn( area1 = 3186, area2 = 325, cross.area = 5880); Error in draw.pairwise.venn(area1 = 3186,

Re: [R] Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

2013-01-27 Thread Fabrice Tourre
Thank you all. Yes. I just miss understand this part. Now it is OK. On Sun, Jan 27, 2013 at 7:41 PM, Paul Boutros paul.bout...@oicr.on.ca wrote: Hi Fabrice, The cross.area parameter gives the size of the intersection, which cannot be larger than the size of either set 1 (area1 parameter) or

Re: [R] Package: VennDiagram. Error in draw.pairwise.venn Impossible: cross section area too large

2013-01-27 Thread Paul Boutros
Hi Fabrice, The cross.area parameter gives the size of the intersection, which cannot be larger than the size of either set 1 (area1 parameter) or set 2 (area2 parameter). You probably want: venn.plot - draw.pairwise.venn( area1 = 3186 + 5880, area2 = 325 + 5880, cross.area = 5880); Paul

[R] R package for normalizing microarray with few samples

2013-01-27 Thread Gundala Viswanath
expressions. The final aim is to identify mRNAs that are significantly down/upregulated. What is the best R package we can use for this? - G.V. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman

[R] Package x12 (X-12-ARIMA Seasonal Adjustment Program)

2013-01-25 Thread Isidro Hidalgo
Hi: I use R 2.15.0 and RStudio 0.95.265. Platform: Windows 7 - 32b When I predict some series with the x12 package (Version Number 0.3 Build 192) with the code... forec - x12(serie, x12path=D:/WinX12/X12a/x12a.exe, decimals=5, automdlT, outlier=all) ... where serie is this ts object:

Re: [R] package gplots: (was:) heatmap.2 problem

2013-01-13 Thread Uwe Ligges
On 13.01.2013 18:06, Peter Davidsen wrote: Sorry, I should have added library(gplots) in the beginning of my code On Sun, Jan 13, 2013 at 5:04 PM, Uwe Ligges lig...@statistik.tu-dortmund.de wrote: mycol - colorpanel(n=3,green,grey,red) Ah, so these are questions re. the gplots

Re: [R] package gplots: (was:) heatmap.2 problem

2013-01-13 Thread Peter Davidsen
Ok, I'll repost my question here: Dear List, I'm trying to generate a simple heatmap that has each row and column separated by a black line. However, for some reason this only happens for the first and last color. The middle color in my colorpanel() command has an addition horizontal and

[R] ask for Dimension reduction, Manifold Learning R-package

2013-01-11 Thread Jieyue Li
Dear All, Does anyone know whether there is a R package existed for dimension reduction (manifold learning) methods, especially like Laplacian Eigenmaps? Thanks a lot! Best, Jieyue [[alternative HTML version deleted]] __ R-help@r

Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot

2013-01-07 Thread Viechtbauer Wolfgang (STAT)
: Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot Good suggestion, and yes, the given examples work. Using a modification of one of the supplied examples, where in the final line I only added the parameter col=c(1,2,3): data(dat.bcg) dat - escalc(measure=RR, ai

Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot

2013-01-07 Thread Brian Z Ring
-Original Message- From: Viechtbauer Wolfgang (STAT) [mailto:wolfgang.viechtba...@maastrichtuniversity.nl] Sent: Monday, January 07, 2013 6:16 PM To: Brian Z Ring; 'David Winsemius'; r-help@r-project.org Subject: RE: [R] package metafor: error when setting 'col' and 'at' for a forest plot

[R] package metafor: error when setting 'col' and 'at' for a forest plot

2013-01-05 Thread Brian Z Ring
I am using metafor to create forest plots. This code gives me the expected plot (setting x axis tick marks): forest(forest$OR, ci.lb=forest$Low, ci.ub=forest$High, at=log(c(.05, .25, 1, 10)), slab=forest$SNP, atransf=exp) As does this (setting colors): forest(forest$OR, ci.lb=forest$Low,

Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot

2013-01-05 Thread David Winsemius
On Jan 4, 2013, at 9:13 PM, Brian Z Ring wrote: I am using metafor to create forest plots. This code gives me the expected plot (setting x axis tick marks): forest(forest$OR, ci.lb=forest$Low, ci.ub=forest$High, at=log(c(. 05, .25, 1, 10)), slab=forest$SNP, atransf=exp) As does this

Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot

2013-01-05 Thread Brian Z Ring
0.410.59 -Original Message- From: David Winsemius [mailto:dwinsem...@comcast.net] Sent: Sunday, January 06, 2013 2:31 AM To: Brian Z Ring Cc: r-help@r-project.org Subject: Re: [R] package metafor: error when setting 'col' and 'at' for a forest plot On Jan 4, 2013, at 9:13 PM

Re: [R] Package check using --as-cran

2013-01-03 Thread Stefan Evert
sh: de: command not found ERREUR : loading failed for ‘i386’, ‘x86_64’ * removing ‘/Users/marcgirondot/Documents/Espace de travail R/Phenology/Source fit/Phenology Package/phenology.Rcheck/phenology’ Looks to me like it might be an issue with whitespace in the directory path. In

Re: [R] Package check using --as-cran

2013-01-03 Thread Marc Girondot
Le 03/01/13 10:33, Stefan Evert a écrit : sh: de: command not found ERREUR : loading failed for ‘i386’, ‘x86_64’ * removing ‘/Users/marcgirondot/Documents/Espace de travail R/Phenology/Source fit/Phenology Package/phenology.Rcheck/phenology’ Looks to me like it might be an issue with whitespace

[R] Package check using --as-cran

2013-01-02 Thread Marc Girondot
I use R 2.15.2 on MacosX 10.8.2 I have a problem checking for a package that I want to submit in CRAN. When I check like that, no problem or warning are detected. system(R CMD check '[path]/phenology') I create the .tar.gz package with that. The file phenology_3.43.tar.gz is generated. I can

[R] problem when installing a R package

2013-01-02 Thread pmouilhade
in context: http://r.789695.n4.nabble.com/problem-when-installing-a-R-package-tp4654404.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] problem when installing a R package

2013-01-02 Thread pmouilhade
Hi everybody, I have tried the following command to skip the load test: R CMD INSTALL --build --no-test-load DistributionS4 Now the error is the excution of zip failed... Any clue ? -- View this message in context: http://r.789695.n4.nabble.com/problem-when-installing-a-R-package

Re: [R] problem when installing a R package

2013-01-02 Thread Uwe Ligges
somebody help me ??? Many thanks in advance -- View this message in context: http://r.789695.n4.nabble.com/problem-when-installing-a-R-package-tp4654404.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing

Re: [R] problem when installing a R package

2013-01-02 Thread Uwe Ligges
? Uwe Ligges Any clue ? -- View this message in context: http://r.789695.n4.nabble.com/problem-when-installing-a-R-package-tp4654404p4654408.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https

Re: [R] Package check using --as-cran

2013-01-02 Thread Uwe Ligges
On 02.01.2013 11:58, Marc Girondot wrote: I use R 2.15.2 on MacosX 10.8.2 I have a problem checking for a package that I want to submit in CRAN. When I check like that, no problem or warning are detected. system(R CMD check '[path]/phenology') I create the .tar.gz package with that. The

Re: [R] Package check using --as-cran

2013-01-02 Thread Marc Girondot
Le 02/01/13 16:03, Uwe Ligges a écrit : On 02.01.2013 11:58, Marc Girondot wrote: I use R 2.15.2 on MacosX 10.8.2 I have a problem checking for a package that I want to submit in CRAN. When I check like that, no problem or warning are detected. system(R CMD check '[path]/phenology') I

Re: [R] Package check using --as-cran

2013-01-02 Thread Uwe Ligges
On 02.01.2013 17:28, Marc Girondot wrote: Le 02/01/13 16:03, Uwe Ligges a écrit : On 02.01.2013 11:58, Marc Girondot wrote: I use R 2.15.2 on MacosX 10.8.2 I have a problem checking for a package that I want to submit in CRAN. When I check like that, no problem or warning are detected.

Re: [R] Package check using --as-cran

2013-01-02 Thread Marc Girondot
Le 02/01/13 17:38, Uwe Ligges a écrit : On 02.01.2013 17:28, Marc Girondot wrote: Le 02/01/13 16:03, Uwe Ligges a écrit : On 02.01.2013 11:58, Marc Girondot wrote: I use R 2.15.2 on MacosX 10.8.2 I have a problem checking for a package that I want to submit in CRAN. When I check like

[R] Creating an R package in windows- where to put images?

2012-12-09 Thread Subramanian S
My R version: 2.15.1- windows While creating an R package in windows, i want to include an image (a .gif image) that will finally be in the package. A function in my package will call the gif image. Where should i put the images before running Rcmd build mypkg or Rcmd INSTALL --build mypkg, so

Re: [R] Creating an R package in windows- where to put images?

2012-12-09 Thread Jeff Newmiller
) .OO#. .OO#. rocks...1k --- Sent from my phone. Please excuse my brevity. Subramanian S su...@sssu.edu.in wrote: My R version: 2.15.1- windows While creating an R package in windows, i want to include an image (a .gif

Re: [R] Creating an R package in windows- where to put images?

2012-12-09 Thread Tyler Rinker
-0800 To: su...@sssu.edu.in; r-help@r-project.org Subject: Re: [R] Creating an R package in windows- where to put images? http://cran.r-project.org/doc/manuals/r-release/R-exts.html#Data-in-packages Don't get stuck on your idea that the file is a gif... once you load it into memory

Re: [R] Creating an R package in windows- where to put images?

2012-12-09 Thread Subramanian S
Thank you Jeff for that.. Thanks Tyler.. that worked.. i put the image in inst/extdata and then built the pkg..and gave the path using system.file().. thanx again [[alternative HTML version deleted]] __ R-help@r-project.org mailing list

[R] Package party Error in model.matrix.default(as.formula(f), data = blocks) :allocMatrix: too many elements specified

2012-12-06 Thread Libo Li
Dear all: I¡¯m trying to get unbiased feature importance of my data via package ¡°party¡±, which contains 1-5 integer value, and a few numeric values attributes. The class label is 1-5 integer value as well. In total I have 20 features with 1100 observations. I checked the type my data

Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7

2012-12-03 Thread R. Michael Weylandt
On Mon, Dec 3, 2012 at 12:42 AM, Jack Bryan dtustud...@hotmail.com wrote: Thanks for your reply. On http://cran.r-project.org/bin/windows/Rtools/ Frozen Rtools216.exe R 2.15.1 to R 2.16.x No Frozen means no available ? So, PortfolioAnalytics cannot be used on Linux or Win until Mar.

Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7

2012-12-03 Thread Uwe Ligges
, 2 Dec 2012 16:35:44 -0800 Subject: Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7 From: djmu...@gmail.com To: dtustud...@hotmail.com (1) If you have R 2.15.2 on your computer, you need Rtools215, not 216; the latter is for the upcoming 2.16 release that is in beta

Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7

2012-12-03 Thread Joshua Ulrich
On Mon, Dec 3, 2012 at 2:13 AM, R. Michael Weylandt michael.weyla...@gmail.com wrote: On Mon, Dec 3, 2012 at 12:42 AM, Jack Bryan dtustud...@hotmail.com wrote: Thanks for your reply. On http://cran.r-project.org/bin/windows/Rtools/ Frozen Rtools216.exe R 2.15.1 to R 2.16.x No Frozen

[R] error of installing/building an R package (PortfolioAnalytics) on Win 7

2012-12-02 Thread Jack Bryan
/PerformanceAnalytics/src/contrib Warning: package ‘PortfolioAnalytics’ is not available (for R version 2.15.2) I also tried http://stackoverflow.com/questions/4739837/how-do-i-install-an-r-package-from-the-source-tarball-on-windows http://cran.r-project.org/doc/manuals/R-admin.html#Windows-packages

Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7

2012-12-02 Thread Jack Bryan
, 2 Dec 2012 16:35:44 -0800 Subject: Re: [R] error of installing/building an R package (PortfolioAnalytics) on Win 7 From: djmu...@gmail.com To: dtustud...@hotmail.com (1) If you have R 2.15.2 on your computer, you need Rtools215, not 216; the latter is for the upcoming 2.16 release

[R] error of installing a R package on Win 7

2012-11-27 Thread Jack Bryan
Hi, I am trying to run R 2.15.2 on Win 7. I am trying to run some example R code of the book :Portfolio Optimization with R/Rmetrics I was told that : To install all packages required for the examples of this ebook we recommendthat you install the bundle package ebookPortfolio. This can be

Re: [R] error of installing a R package on Win 7

2012-11-27 Thread David Winsemius
On Nov 27, 2012, at 9:17 AM, Jack Bryan wrote: Hi, I am trying to run R 2.15.2 on Win 7. I am trying to run some example R code of the book :Portfolio Optimization with R/Rmetrics I was told that : To install all packages required for the examples of this ebook we recommendthat you

[R] Help: is there a R Package for L1-regression (not regression with L1-penalty)

2012-11-21 Thread Chee Chen
Dear All, Is there a R package for L1-regression (meaning, optimize the sum of absolute deviations, NOT TO BE UNDERSTOOD as regression with L1-penalty) ? Any information will be appreciated. Regards, Chee [[alternative HTML version deleted

Re: [R] Help: is there a R Package for L1-regression (not regression with L1-penalty)

2012-11-21 Thread cberry
Chee Chen chee.c...@yahoo.com writes: Dear All, Is there a R package for L1-regression (meaning, optimize the sum of absolute deviations, NOT TO BE UNDERSTOOD as regression with L1-penalty) ? Yes. Any information will be appreciated. See http://cran.cnr.berkeley.edu/web/views

[R] Package glmulti: Include a variable in ALL models

2012-11-08 Thread Machteld Vandecandelaere
Dear all, I have a question about the glmulti package. I want to include some variables in all models. To that end I applied the wrapper function as shown in the examples (http://www.inside-r.org/packages/cran/glmulti/docs/glmulti). To include the variable Geslacht in all models:

Re: [R] Package glmulti: Include a variable in ALL models

2012-11-08 Thread Machteld VDC
Solved! Thanx to Vincent Calcagno: /Dear Machteld, In the coming 2.0 version of glmulti, there will be a more proper way to force variables in. In the current version, it has to be done ad-hoc, and you did it well. The 'formulas' only show terms that are shuffled by glmulti; the constant terms

[R] Package RODBC sqlQueries

2012-10-26 Thread Steven Ranney
All - I'm new to SQL and the RODBC package. I've read the documentation associated with the RODBC package, but I'm still having problems with my SQL statements; I think my syntax, particularly with respect to my WHERE statement, is off but I can't find any documentation as to why. When I run a

Re: [R] Package RODBC sqlQueries

2012-10-26 Thread Marc Schwartz
On Oct 26, 2012, at 11:02 AM, Steven Ranney steven.ran...@gmail.com wrote: All - I'm new to SQL and the RODBC package. I've read the documentation associated with the RODBC package, but I'm still having problems with my SQL statements; I think my syntax, particularly with respect to my

Re: [R] Package Design

2012-10-23 Thread Joost Kremers
Ah, thanks for the info. I'll go ahead and use rms and see how far I get. Joost On Mon, Oct 22 2012, Frank Harrell f.harr...@vanderbilt.edu wrote: Incorrect. The code is 90% compatible. Look at http://biostat.mc.vanderbilt.edu/Rrms for differences. Frank Joost Kremers wrote On Mon,

[R] Package Design

2012-10-22 Thread Joost Kremers
Hi all, I'm planning to work through the book Analyzing Linguistic Data by R.H. Baayen, which is an introduction to R used for, well, what the title says. ;-) On the first page of the book, Baayen says that in order to work with the book, R needs to download and install a number of packages from

Re: [R] Package Design

2012-10-22 Thread R. Michael Weylandt
Design has been superceeded by rms -- give that a shot. Cheers, Michael On Mon, Oct 22, 2012 at 10:51 AM, Joost Kremers joostkrem...@fastmail.fm wrote: Hi all, I'm planning to work through the book Analyzing Linguistic Data by R.H. Baayen, which is an introduction to R used for, well, what

Re: [R] Package Design

2012-10-22 Thread Joost Kremers
On Mon, Oct 22 2012, R. Michael Weylandt michael.weyla...@gmail.com wrote: Design has been superceeded by rms -- give that a shot. I know, but it doesn't look like it's a dorp-in replacement for Design, so I suspect the code in the book won't work with it... Joost On Mon, Oct 22, 2012 at

Re: [R] Package Design

2012-10-22 Thread Frank Harrell
Incorrect. The code is 90% compatible. Look at http://biostat.mc.vanderbilt.edu/Rrms for differences. Frank Joost Kremers wrote On Mon, Oct 22 2012, R. Michael Weylandt lt; michael.weylandt@ gt; wrote: Design has been superceeded by rms -- give that a shot. I know, but it doesn't

Re: [R] R Package for Longitudinal Binary Response Data?

2012-10-21 Thread Frank Harrell
connection of the current response Y with binary responses measured at earlier times, or at least a first-order Markov version of this. I believe this is called alternating logistic regression. Does anyone know of an R package that handles continuous time, i.e., measurement times can be at any follow

[R] R Package for Longitudinal Binary Response Data?

2012-10-17 Thread Frank Harrell
Markov version of this. I believe this is called alternating logistic regression. Does anyone know of an R package that handles continuous time, i.e., measurement times can be at any follow-up time? I don't need random effects in the model. Thanks Frank - Frank Harrell Department

[R] Package survey: Compute standard deviations from complex survey designs

2012-10-16 Thread Sebastian Weirich
Hello, svyvar from the survey package computes variances (with standard errors) from survey design objects. Is there any way to compute standard deviations and their standard errors in a similar manner? Thanks a lot, Sebastian __

Re: [R] Package survey: Compute standard deviations from complex survey designs

2012-10-16 Thread Thomas Lumley
On Tue, Oct 16, 2012 at 10:40 PM, Sebastian Weirich sebastian.weir...@iqb.hu-berlin.de wrote: Hello, svyvar from the survey package computes variances (with standard errors) from survey design objects. Is there any way to compute standard deviations and their standard errors in a similar

[R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Carlos Andrade
Hi, I have been searching everywhere for an implementation of those algorithms, but I have only observed them in Matlab and on the literature. I noticed a package called 'ada' in CRAN but it is not for multi class. I would be happy with just Adaboost.m2, Smoteboost over adaboost.m2 or any other

Re: [R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Jeff Newmiller
May I suggest you use a more appropriate tool for your search: RSiteSearch(multiclass classification) On Sun, 14 Oct 2012, Carlos Andrade wrote: Hi, I have been searching everywhere for an implementation of those algorithms, but I have only observed them in Matlab and on the literature. I

Re: [R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Carlos Andrade
Dear Jeff Newmiller, Thanks for the suggestion I did not know the website but the problem is more dry than simple multiclass classification. In fact, there are even few papers addressing the problem. I was in hope that if not yet available in CRAN someone from the R community could point out any

Re: [R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Carlos Andrade
Pardon, *I hope it is not inappropriate to ask such questions here. Carlos Andrade http://carlosandrade.co 2012/10/14 Carlos Andrade carlosvia...@gmail.com Dear Jeff Newmiller, Thanks for the suggestion I did not know the website but the problem is more dry than simple multiclass

Re: [R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Jeff Newmiller
Asking questions and giving answers about R is what this mailing list is about. It is not really a theory list. If you understand the theory you can search among the libraries yourself. But when the first search I make brings up what to me looks like the answer to your question, then you either

Re: [R] Is there any R package that contains Rusboost based on Adaboost.m2?

2012-10-14 Thread Carlos Andrade
Dear Jeff Newmiller, I apologize if then I did not clarify what I am looking properly. I used the combination you suggested in the query but I did not see any of the resultings adressing what I asked in my title: Rusboost implemented over AdaBoost.M2. Searching for the words 'rusboost',

[R] package request

2012-10-10 Thread sagarnikam123
which package from CRAN used for Big-Data analysis ? is there any separate package for Big-Data analysis? or for making reports Business intelligence -- View this message in context: http://r.789695.n4.nabble.com/package-request-tp4645661.html Sent from the R help mailing list archive at

Re: [R] package request

2012-10-10 Thread Greg Snow
There are packages for big data analysis, which is best depends on what you want to do. The High Performance Computing task view on CRAN has a section on packages that deal with big data which gives some more detail and may help you choose which package(s) to use. On Wed, Oct 10, 2012 at 12:36

Re: [R] How to write R package

2012-09-28 Thread Duncan Murdoch
On 27/09/2012 5:15 PM, Dr. Alireza Zolfaghari wrote: Hi List, Would you please send me a good link to talk me through on how to write a R package? See the ?package.skeleton help page. After you have run it, follow the instructions in the Read-and-delete-me file that it will create

Re: [R] How to write R package

2012-09-28 Thread Uwe Ligges
On 28.09.2012 14:22, Duncan Murdoch wrote: On 27/09/2012 5:15 PM, Dr. Alireza Zolfaghari wrote: Hi List, Would you please send me a good link to talk me through on how to write a R package? See the ?package.skeleton help page. After you have run it, follow the instructions in the Read

[R] How to write R package

2012-09-27 Thread Dr. Alireza Zolfaghari
Hi List, Would you please send me a good link to talk me through on how to write a R package? thanks Alireza [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] How to write R package

2012-09-27 Thread Steve Lianoglou
On Thu, Sep 27, 2012 at 5:15 PM, Dr. Alireza Zolfaghari ali.zolfagh...@gmail.com wrote: Hi List, Would you please send me a good link to talk me through on how to write a R package? There are many, many, many resources: http://lmgtfy.com/?q=writing+r+packages+tutorial Take the first hit

[R] Package ‘orcutt’ bug?

2012-09-26 Thread 王柏元
Hello~   Did any one have used the package 'orcutt' ?   I find that it can not work smoothly in a single variable regression. I use the example following, it function very well.   But when I regress cons on price (use the reg1-lm(cons~price+income+temp)) , then  use

Re: [R] Package ‘orcutt’ bug?

2012-09-26 Thread David Winsemius
Shouldn't you be sending this to the maintainer? -- David. On Sep 26, 2012, at 9:03 PM, 王柏元 wrote: Hello~ Did any one have used the package 'orcutt' ? I find that it can not work smoothly in a single variable regression. I use the example following, it function very well. But

[R] R package for dashboard

2012-09-19 Thread XINLI LI
What package can be used to produce dashboard in R? Thanks and Regards, Xin __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide

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