Thanks Henrik and Tom, job done. Nice solutions.
All the best
Antonio Olinto
2015-02-02 17:31 GMT-02:00 Henrik Bengtsson h...@biostat.ucsf.edu:
On Mon, Feb 2, 2015 at 9:56 AM, Antonio Silva aolinto@gmail.com
wrote:
Hi R users
I want to save a plot after using the command identify.
Estimado Betancourt
No estoy siguiendo su problema, pero si manda algo en R con pocos datos,
como para que lo ejecute en mi compudadora, y me dice que desea buscar,
puedo revisar en mis archivos si hay alguna solución a su problema. Si
no es inconveniente, pero como son presiónes arteriales
Try adding the line
#define R_NO_REMAP
to the top of your file (before any #include's) so the R
include files don't define length(x).
Bill Dunlap
TIBCO Software
wdunlap tibco.com
On Mon, Feb 2, 2015 at 1:11 PM, sun...@telenet.be wrote:
Hi,
when writing a simple cpp function to be run in R
On Feb 2, 2015, at 10:50 AM, Jeff Newmiller wrote:
Cc'd back to the list... I am a bad bet for one-on-one help.
Showing that your libcurl claims to support HTTPS is progress. I think that
at this point you should read the last sentence in the curl FAQ 3.21, which I
found by searching for
Hi,
when writing a simple cpp function to be run in R I obtain a compilation error
as soon as I include fstream. Any hints of what goes wrong and how to fix it?
It's Windows 7 64-bit, R-3.1.2 and Rtools32. An example to recreate the error:
#include R.h
#include Rdefines.h
#include
Changing urls to remove spaces and replace single quotes with double quotes
resolved the issue. Apparently windows demands double quotes.
Thanks for your help.
On Mon, Feb 2, 2015 at 1:50 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us
wrote:
Cc'd back to the list... I am a bad bet for one-on-one
Thanks,
After posting I came across this page:
http://www.r-bloggers.com/concatenating-a-list-of-data-frames/
rbindlist seems to be a pretty good solution.
On Mon, 2015-02-02 at 16:09 -0500, dan wang wrote:
How about this,
t - lapply(a,function(x){colnames(x)=c(A,B);return(x)})
If you are familiar with GDB, you can just start R by R -d gdb.
Dirk gave a good example on SO, please check the link below:
http://stackoverflow.com/questions/11345537/debugging-line-by-line-of-rcpp-generated-dll-under-windows
Best,
KK
On Mon, Feb 2, 2015 at 2:00 PM, Charles Novaes de
On Feb 2, 2015, at 10:50 AM, Jeff Newmiller wrote:
Cc'd back to the list... I am a bad bet for one-on-one help.
Showing that your libcurl claims to support HTTPS is progress. I think that
at this point you should read the last sentence in the curl FAQ 3.21, which I
found by searching for
Included at the end of this message is the full compiler output. I have
installed jre-7 from Oracle; The java-1.7.0-jdk* packages and javacc are
installed. It looks like the archiver, header prep., and compiler are
missing. I can provide anything else that can help solve my problem. I
really
How about this,
t - lapply(a,function(x){colnames(x)=c(A,B);return(x)})
do.call(rbind,t)
On Mon, Feb 2, 2015 at 4:00 PM, Tom Wright t...@maladmin.com wrote:
Hi all,
I'm trying to avoid loops (no real reason, just as an exercise).
Given a list:
I am not aware that Windows demands double quotes for anything in R. I think
the spaces was the problem.
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.us
Thank you, it worked.
For completeness, had to add Rf_ in front of allocVector (and possibly any
other function from Rdefines.h)
- Original Message -
From: William Dunlap wdun...@tibco.com
To: sun...@telenet.be
Cc: r-help@r-project.org
Sent: Monday, February 2, 2015 10:29:19 PM
On 02 Feb 2015, at 23:42 , Mikael Olai Milhøj mikaelmil...@gmail.com wrote:
Hi,
I'm having trouble trying to plot the density of the residuals against the
standard normal distribution N(0,1). (I'm trying to see if my residuals are
well-behaved).
I know hwo to calculate the
Hi Friends,
I want to assign asymmetric cost values at the time training.
For example : For false negative cost should be 10 and for For false
positive it should be 1.
Can some help me with this.
Code:
svmFit - train(Y ~ .,
data = train,
method = svmRadial,
Yesterday I installed the most recent R and maxent package, but it stopped
working. Even a simple command like
Model - maxent(matrix(c(1,2,3,4,5,6,7,8), nrow=2, ncol=4),c(1,-1))
will cause a fatal error in R. I am attaching a screenshot to this email.
Any help will be appreciated.
Best
On 2015-02-03 00:46, Rolf Turner wrote:
[...]
The deldir function creates a Delaunay triangulation/Dirichlet
tessellation inside a rectangular window (denoted by rw in the
argument list). This is the only boundary invoked or involved.
The function plot.tile.list() will *plot* the Dirichlet
Hi,
I'm having trouble trying to plot the density of the residuals against the
standard normal distribution N(0,1). (I'm trying to see if my residuals are
well-behaved).
I know hwo to calculate the standardized residuals (I guess that there may
be a simple way using a R function) and then plot
Since you are plotting densities, check out the sm package. It has been
over a year or so since I've used it, but there was a setting on the
univariate densities to check the data against a normal distribution.
Best, MEH
On Mon, Feb 2, 2015 at 2:42 PM, Mikael Olai Milhøj
On Mon, Feb 2, 2015 at 4:49 PM, Sun Shine phaedr...@gmail.com wrote:
Hi list
I've signed up for a Coursera course on exploratory data analysis, and the
recommendation is to update to R base 3.1.1. I'm currently on 3.0.2.
If I do upgrade, what is the best way for me to upgrade all my packages
Hi list
I've signed up for a Coursera course on exploratory data analysis, and
the recommendation is to update to R base 3.1.1. I'm currently on 3.0.2.
If I do upgrade, what is the best way for me to upgrade all my packages
for compatibility? Would this be accomplished through the command:
Responding to several messages in this thread...
All the more reason to use = instead of -
Definitely not!
Martin and Rolf are right, it's not a reason for that; I wrote that quickly
without thinking it through. An = user might be more likely to fall for the
gotcha, if not spacing their
Dear Eike Petersen,
Re:
Hello everyone,
the docpage for the fft function states:
“Description: Performs the Fast Fourier Transform of an array.”
and
“Arguments – inverse: if ‘TRUE’, the unnormalized inverse transform is
computed
(the inverse has a ‘+’ in the exponent of e, but
I think you missed the question, Henrik, which was directed at updating
the local 3.1 library with all of the packages that were in the 3.0
library.
The usual advice for this is to copy your 3.0 library onto your 3.1
library (duplicate directory structure) so R knows what packages you want
On 02-Feb-2015 11:58:10 Rolf Turner wrote:
On 02/02/15 14:26, Steve Taylor wrote:
All the more reason to use = instead of -
Couldn't agree less, Steve. The - should be used for assignment. The
= sign should be reserved for handling function arguments in the
name=value form. Doing
Hola a todos, a ver si me pueden echar una mano que estoy atascado.tengo estas
dos tablas:
head (intento1) codigo categoria talla num1
1 904 400 12 1
904 460 13
Hi!
I am cross compiling R-3.1.2 for Galileo board with the source code. I am
able to configure R-3.1.2 without any errors with the following command :
./configure --host=i586-poky-linux-uclibc CC=i586-poky-linux-uclibc-gcc
CXX=i586-poky-linux-uclibc-g++
With a little effort you could implement Rstudio and try RMD (R Markdown)
it is very proficient, look at
https://support.rstudio.com/hc/en-us/articles/200552086-Using-R-Markdown
Il 01/feb/2015 21:07 Ragia Ibrahim ragi...@hotmail.com ha scritto:
Dear group,
I have many plots and numeric
On 02/02/15 14:26, Steve Taylor wrote:
All the more reason to use = instead of -
Couldn't agree less, Steve. The - should be used for assignment. The
= sign should be reserved for handling function arguments in the
name=value form. Doing anything else invites confusion and
occasionally
On 02 Feb 2015, at 13:09 , S Ellison s.elli...@lgcgroup.com wrote:
aovsubj - aov(value~group+time+Error(subject),data=dataRMANOVA)
and
aovsubjgroup - aov(value~group+time+Error(subject/group),data=dataRMANOVA)
Since no-one else seems to have answered you let me point out that your first
Hello all,
When I met this following error message:
Error: OutOfMemoryError (Java): GC overhead limit exceeded
I usually use the following options to overcome the memory limit:
options(java.parameters = -Xmx1024m) # to reduce the error message Error:
OutOfMemoryError (Java): GC overhead limit
In your example, P is a three dimensional array. You can assign names to
the three dimensions using the dimnames() function. For example, this
command assigns names to the first two dimensions, but leaves the third
dimension without names.
dimnames(P) - list(c(live, dead), c(live, dead), NULL)
Rolf Turner is right on the money about not mixing-up '=' and '-'
Though this 'gotcha' will always a threat while '-' is the assignment
operator.
The old Algol60 syntax of ':=' was less error-prone, but I guess '-' is too
firmly bedded-in to ever change.
Meanwhile, spaces around the
Cross-building is not supported (building R is more than just compiling
and needs a working R executable).
And (see the posting guide) this was not the right list for such a question.
On 02/02/2015 07:16, Vivek Rangi wrote:
Hi!
I am cross compiling R-3.1.2 for Galileo board with the
Moral of story, computers do what you tell them, not what you meant.
Not only a fortune, but profound wisdom.
Jim
On Mon, Feb 2, 2015 at 12:38 PM, Kevin E. Thorpe
kevin.tho...@utoronto.ca wrote:
Using = has it's problems too.
For example,
print(fit - lm(...))
Assigns the result of the
?merge
Un saludo.
Isidro Hidalgo Arellano
Observatorio Regional de Empleo
Consejería de Empleo y Economía
http://www.jccm.es
-Mensaje original-
De: R-help-es [mailto:r-help-es-boun...@r-project.org] En nombre de
pepeceb
Enviado el: lunes, 02 de febrero de 2015 10:31
Para:
On 01/02/2015 10:26 PM, p_connolly wrote:
Just what is meant by dummy points as referred to by the help for the
deldir() function? I understood they indicated the boundary beyond
which triangulation would cease.
You should say what package you're asking about. deldir() is not a base
R
Hi Ragia,
There are also the R2HTML and prettyR (see htmlize) packages that will
output an R session in HTML format.
Jim
On Mon, Feb 2, 2015 at 10:51 AM, Henrik Bengtsson h...@biostat.ucsf.edu wrote:
If you're happy with outputting to a multi-page PDF, then you can just
set the default
Gracias Isidro, perfecto.
total - merge(intento1,intento2,by=c(codigo,categoría))
De: Isidro Hidalgo ihida...@jccm.es
Para: 'pepeceb' pepe...@yahoo.es; 'r-help-es' r-help-es@r-project.org
Enviado: Lunes 2 de febrero de 2015 11:24
Asunto: RE: [R-es] Agregar variables
?merge
Un
aovsubj - aov(value~group+time+Error(subject),data=dataRMANOVA)
and
aovsubjgroup - aov(value~group+time+Error(subject/group),data=dataRMANOVA)
Since no-one else seems to have answered you let me point out that your first
formulation treats subject 1 in the int group as being the same as
I'd rather say that it is good reason to use spaces around operators. Makes the
code easier to read too. (_Possible_ to read for some.)
We've probably all done it. I did, once upon a time in S-Plus, on the results
of a multi-day simulation study:
nontrivial analysis$statistic
[1] -1.28
sim -
On 02/02/15 16:26, p_connolly wrote:
Just what is meant by dummy points as referred to by the help for the
deldir() function? I understood they indicated the boundary beyond
which triangulation would cease.
I thought I would need the x/y elements (as described in the help file
at the end of
On Mon, Feb 2, 2015 at 8:57 PM, Steve Taylor steve.tay...@aut.ac.nz wrote:
Responding to several messages in this thread...
All the more reason to use = instead of -
Definitely not!
Martin and Rolf are right, it's not a reason for that; I wrote that quickly
without thinking it through.
I disagree. Assignments in my code are all lines that look like this:
variable = expression
They are easy to find and easy to read.
-Original Message-
From: Ista Zahn [mailto:istaz...@gmail.com]
Sent: Tuesday, 3 February 2015 3:36p
To: Steve Taylor
Cc: r-h...@stat.math.ethz.ch
I did not start out liking -, but I am quite attached to it now, and even Rcpp
feels weird to me now. This may seem like yet another variation on a theme that
you don't find compelling, but I find that
f(x=x)
makes sense when scope is considered, but
x=x
on its own is silly. That is why I
Nobody would write x=x or indeed x-x; both are silly. If I found myself
writing f(x=x) I might smirk at the coincidence, but it wouldn't bother me. I
certainly wouldn't confuse it with assigning x to itself.
By the way, here's another assignment operator we can use:
`:=` = `-` # this is
Hi,
In our data we have 10 people with 10 different attributes , we want to rank
the people based on the weightage of these attributes.
Suggest the best statistical method to do this.
Does Revolution R solves my problem??
Regards,
Lalitha Kristipati
Associate Software Engineer
There's also a section about this in Writing R extensions:
http://cran.r-project.org/doc/manuals/r-release/R-exts.html#Debugging-compiled-code
Pierrick
On Mon, Feb 2, 2015 at 10:42 PM, Qiang Kou q...@umail.iu.edu wrote:
If you are familiar with GDB, you can just start R by R -d gdb.
Dirk gave
Does the following work for you. The only trick is working around the fact
that matrix subscripting does not allow out-of-bounds subscripts but vector
subscripting does. We do the subscripting in two steps, relying on the
drop=TRUE default in the matrix subscripting operator that converts the
The memory issue is in Java, not R.
You can either be more parsimonious in your use of Java memory (we have no idea
what you are doing with it here, so how you do that is up to you), or you can
allocate more memory to Java (you may be able to guess how to do that, or read
the Java
On the off-chance, are you using XLConnect or xlsx packages that are using
Java to access the spreadsheets? If it is XLConnect, are you access the
'.xlsx' style workbooks? If so, can you try using '.xls' workbooks? This
is a problem that I have had; the '.xlsx' workbooks take a lot more
I'd also be interested in why the 'direct, brute force' approach
(above) doesn't work,
Your example was a 3-dimensional array, so
rownames(P) - colnames(P) - c(live', 'dead')
would have worked; rownames() and colnames() work on dimnames[1] and
dimnames[2].
But
rownames(P[,,1])
could not
This is not an r-help issue. Post on a statistics list like
stats.stackexchange.com instead for a variety of opinions.*
Cheers,
Bert
*Which will probably be useless given your paucity of data. But that's
just *my* useless opinion.
Bert Gunter
Genentech Nonclinical Biostatistics
(650) 467-7374
All the more reason to use = instead of -
Definitely not!
(As you were told, there are other drawbacks).
R does not have to look like C, it *is* different in many ways.
If you use a decent IDE for R, you get spaces around ' - ' for
free: Both in ESS and in Rstudio, you can use [Alt] -
to
Dear list,
I would like to validate various GLMs, all of them containing (among others)
several factors as predictors. I thought about using cv.glm from the boot
package, but necessarily got the error factor xy has new level z. Is there
any function to easily cross validate LMs or GLMs
Please don't cross-post to multiple lists. There is a Posting Guide mentioned
in the footer that you probably won't see because you are using Nabble. It
would have informed you that the R-devel mailing list was for people interested
in modifying R, definitely not this topic.
As to your
How big are the worksheets that you are reading in? Do you have multiple
ones open at the same time? Have to tried to use 'xlcFreeMemory' to see if
this helps? How much RAM to you have on your system?
Jim Holtman
Data Munger Guru
What is the problem that you are trying to solve?
Tell me what
Hello all,
I am having a problem with installing rJava on SL 6.5. I am having compile
errors when I try to from CRAN using install.packages(XLConnect, repos=
http://cran.rstudio.com/;). I can provide anything necessary, but I am
unsure what to provide. Thank you for your help in advance.
output
Hello Jim,
I already use “.xls” for the loading, but still have the memory issue….
Thanks,
Rebecca
From: jim holtman [mailto:jholt...@gmail.com]
Sent: Monday, February 02, 2015 10:21 AM
To: Jeff Newmiller
Cc: Yuan, Rebecca; R help (r-help@r-project.org)
Subject: Re: [R] Error:
Cc'd back to the list... I am a bad bet for one-on-one help.
Showing that your libcurl claims to support HTTPS is progress. I think that at
this point you should read the last sentence in the curl FAQ 3.21, which I
found by searching for protocol https not supported or disabled in libcurl.
On Mon, Feb 2, 2015 at 1:39 PM, stephen sefick ssef...@gmail.com wrote:
Hello all,
I am having a problem with installing rJava on SL 6.5. I am having compile
errors when I try to from CRAN using install.packages(XLConnect, repos=
http://cran.rstudio.com/;). I can provide anything necessary,
Don't know anything about SL but have you installed a Java run time independent
of R?
---
Jeff NewmillerThe . . Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.
replacing png(...) and dev.off() with
dev2bitmap('test.png')
seems to work.
On Mon, 2015-02-02 at 15:56 -0200, Antonio Silva wrote:
Hi R users
I want to save a plot after using the command identify.
I use identify to place labels manually near the points in order to avoid
overlapping
Hi all,
I'm trying to avoid loops (no real reason, just as an exercise).
Given a list:
list(data.frame(a=1:3,b=letters[1:3]),data.frame(x=1:5,b=LETTERS[1:5]))
Is there an easy way to collapse this to a single dataframe
result-data.frame(a=c(1:3,1:5),b=c(letters[1:3],LETTERS[1:5]))
Thanks
Dear All
We are using the dendextend package to modify the plot output from a pvclust
clustering
The model is created with
result - pvclust(chord.1, method.dist=euclidian,
method.hclust=average,nboot=10)
The plot is then formatted as following
dend - as.dendrogram(result)
dend %%
Hi,
I hope the following works for you. The plot is: Rplot.png
http://r.789695.n4.nabble.com/file/n4702679/Rplot.png
data - read.table(rHelp_20150202.txt,header=TRUE)
order.data - order(data$counts,decreasing=TRUE)
order.data
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
Hello everyone,
the docpage for the fft function states:
“Description: Performs the Fast Fourier Transform of an array.”
and
“Arguments – inverse: if ‘TRUE’, the unnormalized inverse transform is computed
(the inverse has a ‘+’ in the exponent of e, but here, we do _not_ divide by
Hi R users
I want to save a plot after using the command identify.
I use identify to place labels manually near the points in order to avoid
overlapping lines and numbers.
x-c(1,2,3,4,5,6)
y-c(20,30,15,7,25,40)
plot(x,y,type=b,ylim=c(0,45))
identify(x,y,labels=y)
But when I add
Hi,
I have a data frame named data and with the statement
data[5:length(data[[1]]),] I can get row 5 to the end of the data.
data
role counts
1 Agent220
2 Theme169
3 Patient 67
4 Location 41
5 Destination 32
6
Hello,
I've connected R to Microsoft Access databases for years now
using odbcConnectAccess2007. I recently got a new computer and R is
absolutely refusing to connect to any Access database with the following
error message:
Warning messages:
1: In odbcDriverConnect(con, ...) :
[RODBC] ERROR:
Dear all,
I am using R CMD SHLIB to compile a c++ code into a library (.so) and
dyn.load to load this library into a R code. I am facing some problems in
the c++ part that I can not figure out how to solve. Do you recomend any
good way to debug this R + C++ program? If I was programming only in
On Feb 2, 2015, at 12:00 PM, utz.ryan utz.r...@gmail.com wrote:
Hello,
I've connected R to Microsoft Access databases for years now
using odbcConnectAccess2007. I recently got a new computer and R is
absolutely refusing to connect to any Access database with the following
error message:
On Mon, Feb 2, 2015 at 9:56 AM, Antonio Silva aolinto@gmail.com wrote:
Hi R users
I want to save a plot after using the command identify.
I use identify to place labels manually near the points in order to avoid
overlapping lines and numbers.
x-c(1,2,3,4,5,6)
y-c(20,30,15,7,25,40)
Hi Yao,
Messy, but this is the closest I can get:
yhlist-list(K=matrix(0,ncol=2,nrow=0),
GSEGTCSCSSK=matrix(c(6,8),nrow=2,ncol=2),
GFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHHVPEAK=matrix(6,ncol=2,nrow=1),
LVECIGQELIFLLPNK=matrix(6,ncol=2,nrow=1),
NFK=matrix(0,ncol=2,nrow=0),
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