. (And if it would be easy to get rid of scientific notation,
that would be good to know too). So ideally keep the table/headers etc,
but chance the entries.
I've looked at format and print without much success.
I'm using R 2.10.1 in a Linux environment.
Thanks,
Esmail
Below's an example of generating
the code I used to generate my matrices and some things
I tried (mentioned above) and also the output get so far.
FWIW, Linux environment, R 2.10.1.
Thanks,
Esmail
ps: Am I correct that if I do the assignment
pop2 = pop
I create a totally separate instance/(deep)copy of the
data? I tried
that unfortunately still uses 2.8.0
.. I'd rather not have to keep modifying the source each time I upload it.
I'm hoping someone has an easy fix.
Thanks
Esmail
PS: in v 2.10.1 no output at all is generated when the string isn't found
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I'm
going to try to use this code to determine if I should display the info or
not:
min = version[[minor]]
maj = version[[major]]
ver = paste(maj, '.',min, sep='')
if (ver == 2.8.0) ...
Cheers,
Esmail
--
View this message in context:
http://n4.nabble.com/sprintf-integer-0-problem
On 24-Feb-10 20:03, Henrique Dallazuanna wrote:
You can use tryCatch also:
cat(tryCatch(sprintf('found %s in col %d\n', s, c), error =
function(x)cat('Not Found\n')))
Ah .. one more way .. thanks, I've saved it away in my set of
R tricks!
Best,
Esmail
versions 2.9-2.10
Thanks,
Esmail
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/Rnews_2003-3.pdf#page=29
Thanks for the pointer, that looks very interesting.
Any lint-like utilities out there? I miss a lot of the development
tools I have available for Python or Java with R, esp once the code
starts to grow beyond a few hundred lines.
Esmail
for this, but this looks very
inconsistent to me.
R version 2.10.1 (2009-12-14)
Ubuntu 9.04
Esmail
---
#if (ZELIG) if/else #1
# cat(sprintf(Zelig for %d runs - timeR\n, RUNS))
#else
# cat(sprintf(lme for %d runs - timeR\n, RUNS
other
languages I have worked with, but the explanation is clear.
Thanks you!
Esmail
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On 15-Feb-10 09:27, lee.ad...@luminant.com wrote:
I, personally, utilize the ifelse(test,statement,statement) function when
possible over the methodology outlined.
Haven't used that construct before, I'll check it out.
Thanks. And mystery solved.
Esmail
way yet to get the AIC/BIC/logLik values? (I hope
this question makes sense)
Thanks,
Esmail
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help.
Thanks!
Esmail
Ubuntu 9.04
Linux t61 2.6.28-17-generic #58-Ubuntu SMP Tue Dec 1 18:57:07 UTC 2009 i686
GNU/Linux
library(lme4)
Loading required package: Matrix
Loading required package: lattice
Attaching package: 'Matrix'
The following object(s) are masked from
On 10-Jan-10 12:12, Dieter Menne wrote:
Esmail Bonakdarian-4 wrote:
Using Ubuntu 9.04 and R 2.8.1.
For a project I need to use the Zelig package, which in turn wants to
use the lme4 package. When trying to use Zelig and it tries to its
required
packages I get the following error message
your suggestion and
upgraded R to 2.10.1 and I had to install lme4 and zelig from source
to get the current packages.
Thanks again!
Esmail
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level step by
step.
Regards
Julia
I heard some time back that O'Reilly is coming out with a book on R .. not
sure if that's out yet, or how good it might be. Worth looking into ...
Esmail
ps: Just checked, 'R in a Nutshell':
http://oreilly.com/catalog/9780596801717
release date dec 2009
, I'll check it out.
Cheers,
Esmail
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Duncan Murdoch wrote:
On 8/28/2009 8:59 AM, Esmail wrote:
Perhaps most of you have already seen this?
http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html
Comments/Critiques?
The rules are mostly reasonable, though they aren't the ones followed in
the R source. One bad
(Ted Harding) wrote:
On 28-Aug-09 12:59:24, Esmail wrote:
Perhaps most of you have already seen this?
http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html
Comments/Critiques?
I think it is grossly over-prescriptive. For example:
function names have initial capital
Kingsford Jones wrote:
A few thoughts:
...
-- It's nice that people have made these guides available
Agreed .. it helps those relatively new to the language (and possible
other language biases) get their orientation.
Cheers,
Esmail
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Barry Rowlingson wrote:
On Fri, Aug 28, 2009 at 5:11 PM, hadley wickhamh.wick...@gmail.com wrote:
In my view, that's the purpose of indenting - you see scope from
indenting.
*cough* python *cough*
:-)
(my favorite language at the moment)
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Quick informal poll: what is everyone's favorite text editor for working
with R?
Emacs+ESS
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Perhaps most of you have already seen this?
http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html
Comments/Critiques?
Thanks,
Esmail
ps: Reminds me of PEP 8 for Python
http://www.python.org/dev/peps/pep-0008/
Maybe not that surprising since Python is also one
repeatedly over
various ranges or starting points.
Thanks again for the help/information, much appreciated.
Esmail
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of
a genetic algorithm I am testing.
I appreciate you taking the time to explain this so clearly, thanks
again,
Esmail
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they also potentially only give me the local maxima/minima? I am not a
regular R user, so my knowledge is clearly not where is could/should be.
Thanks,
Esmail
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a 1-D function?
For this particular instance I am interested in the minimum of
x * sin(4*x) + 1.1 * sin(2*y), where x,y in range 0-10
so an example of this in R would be great, though in other problems
the range may not be identical for x and y.
Thanks,
Esmail
ps: Has anyone written any
(-10,10), lower = -10, upper=10, maximum=FALSE)
result
$minimum
[1] 6.290112
$objective
[1] 91.52681
However, I believe the correct values should be
minimize:
x = -5.838 val= -133.020
maximize:
x = -8.957 val= 438.448
Thanks,
Esmail
This is w/ R version 2.8.1 (2008-12-22) under Ubuntu
with even the simple (?) optimize function, so
I'll first have to figure out what I'm doing wrong with it.
Best,
Esmail
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is not speed, but frugal power consumption.
HTH,
Esmail
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'
Is there an equivalent R code segment?
I hope this post is clearer than my original one. Thank you David for
pointing out some of the shortcomings of my earlier post.
Thanks,
Esmail
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David Winsemius wrote:
Yes. As I said before I am going to refrain from posting speculation
until you provide valid R code
that will create an object that can be the subject of operations.
The code I have provided works, here is a run that may prove helpful:
POP_SIZE = 6
LEN = 8
,] TRUE TRUE TRUE TRUE TRUE
Thanks for the help, much appreciated.
Esmail
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this now too. It's really confusing to
go back and forth between different languages. I have been programming
in Python for the last 2 months and everything there is a reference .. so
I have to worry about deep copy etc.
Thanks!
Esmail
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if I change something in 'pop' would it be reflected in 'keep_pop'
too? (I don't think so, but just wanted to check). I would like
two independent copies.
Regardless, the net outcome was new knowledge, so this is a good outcome.
Esmail
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, no?
res=pop[1:ROWS,] == keep[1:ROWS,]
if ((ROWS*COL) == sum(res))
{
cat('they are equal\n')
}else
cat('they are NOT equal\n')
Thanks!
Esmail
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Babtiste,
Thanks for pointing out the various options that exist. R is
a very rich language indeed and it's good to know how to accomplish
tasks in various ways.
Cheers,
Esmail
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ONKELINX, Thierry wrote:
Have a look at all.equal
matA - matrix(1:4, ncol = 2)
matB - matA
all.equal(matA, matB)
matB[1,1] - -10
all.equal(matA, matB)
Hi Thierry,
Thanks, all.equal does indicate if it's all equal so that
works great!
Much nicer than my hack - thanks,
Esmail
'
Is there an equivalent R code segment?
Thanks,
Esmail
--- the code called above -
# create a binary vector of size len
#
create_bin_Chromosome - function(len)
{
sample(0:1, len, replace=T
be something like
---
r = c()
for (i in 1:10)
if (i in p)
r = c(r, flip[i])
r
doesn't work :-) R doesn't like the if statement.
Is there a nice, concise way to do this? The vector contents and
size will vary, but length of p = b.
Thanks,
Esmail
TRUE/FALSE to 0/1
r
[1] 0 0 0 0 0 0 0 0 1 0
Great! .. thanks ... I appreciate the hlep,
Esmail
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jim holtman wrote:
try this:
b - c(1, 0, 1, 0, 1, 0, 1, 0, 1, 0)
p - c(1, 3, 5, 7)
b[p] - ifelse(b[p] == 0, 1, 0)
I'll have to look up the ifelse operator, looks like
the ternary operator used in C
b[p] = b[p]==0?1:0
Cool - thanks!
Esmail
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Patrick Burns wrote:
'The R Inferno' page 78 is one source you can
look at.
Patrick Burns
wow .. nice! .. thanks for posting this reference.
Esmail
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matrix. Do I have to worry
about deallocating the memory space of the first matrix or will it
automagically go away if I assign the new matrix to the old matrix
identifier (assuming nothing else is pointing at it)?
Thanks,
Esmail
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as I am starting to discover
(and folks on the list here are very helpful).
Regards,
Esmail
David Winsemius wrote:
See if this helps:
mtx-matrix( rep(letters[1:4], 6), nrow=4)
mtx
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] a a a a a a
[2,] b b b b b b
[3,] c c c c c c
[4,] d d d
Doran, Harold wrote:
lm(y ~ x-1)
solve(crossprod(x), t(x))%*%y# probably this can be done more
efficiently
You could do
crossprod(x,y) instead of t(x))%*%y
that certainly looks more readable (and less error prone) to an R newbie
like myself :-)
on the
programming aspects of R. Problem is that I suspect my colleagues who
are providing some guidance with the stats end are not quite experts
themselves, and certainly new to R.
Cheers,
Esmail
Kenn Konstabel wrote:
lm does lots of computations, some of which you may never need. If speed
really matters, you
Gabor Grothendieck wrote:
On Wed, Feb 18, 2009 at 7:27 AM, Esmail Bonakdarian esmail...@gmail.com wrote:
Gabor Grothendieck wrote:
See ?Rprof for profiling your R code.
If lm is the culprit, rewriting your lm calls using lm.fit might help.
Yes, based on my informal benchmarking, lm
am not familiar with lm.fit, I'll definitely look it up. I hope it's similar
enough to make it easy to substitute one for the other.
Thanks for the suggestion, much appreciated. (My runs now take sometimes
several hours, it would be great to cut that time down by any amount :-)
Esmail
with Python to be able
to access R's functionality.
Is there much of a performance hit either way? (as both are interpreted
languages)
Thanks,
Esmail
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Hello!
On Tue, Feb 17, 2009 at 5:58 PM, Warren Young war...@etr-usa.com wrote:
Esmail Bonakdarian wrote:
I am just wondering if any of you are doing most of your scripting
with Python instead of R's programming language and then calling
the relevant R functions as needed?
No, but if I
On Tue, Feb 17, 2009 at 6:05 PM, Barry Rowlingson
b.rowling...@lancaster.ac.uk wrote:
2009/2/17 Esmail Bonakdarian esmail...@gmail.com:
When I need to use the two together, it's easiest with 'rpy'. This
lets you call R functions from python, so you can do:
from rpy import r
r.hist(z
for #3,
or for that matter anything that looks odd.
Below my partial solution .. the HUX function is what I am trying
to finish if someone can point me in the right direction.
Thanks
Esmail
--
rm(list=ls())
# create a binary vector of size
it is.
Mostly I need help for #2, but will happily accept suggestions for #3,
or for that matter anything that looks odd.
Below my partial solution .. the HUX function is what I am trying
to finish if someone can point me in the right direction.
Thanks
Esmail
--
rm(list=ls
Gene Leynes wrote:
This is my first help post, hope it works!
Just check out the sample function
At the command line type:
?sample
I think it will be pretty clear from the documentation.
Yes, most excellent suggestion and quite helpful!
Thanks,
Esmail
Jim Porzak wrote:
The user of your R script sees only the outputs you create. The R source
is hidden.
Ah .. that sounds great .. I wish I had known about this a month ago!
I'll have to check it out - thanks!
Esmail
HTH,
Jim Porzak
..
Would the R script that is being run be hidden from
Spencer Graves wrote:
If you want to hide the fact that you are using R -- especially if
you charge people for your software that uses R clandestinely -- that's
a violation of the license (GPL).
No on both accounts .. but thanks for pointing this out none the less.
hadley wickham wrote:
2008/6/20 [EMAIL PROTECTED] [EMAIL PROTECTED]:
If you do nothing to your code, in 18 months time its performance will
have doubled because computers will have become faster. Your code
will not get easier to understand by itself.
Very nicely put .. and true too!
on how to read your new column names from a file into a vector
but if you can get them into that format this should let you accomplish your
goal.
Esmail
load(Data/simpleTestData2.rda)
df
Y X1 X2 X3 X4 X5 X6
1 74.9 10 49.8 0.2 99 50 57
2 79.8 11 49.6 0.4 69 91 57
3 84.4 12
Hi,
I have matrix of bits and a target vector. Is there an
efficient way to search the rows of the matrix for the target?
I am interested in the first row index where target is found.
Example:
source(lookup.R)
[,1] [,2] [,3] [,4] [,5]
[1,]10110
[2,]110
= length(pop[1,])
for(i in 1:rows)
{
result = (pop[i,] == target)
if (sum(which(result==FALSE)) == 0)
return(i)
}
return (-1)
}
idx=searchPop(pop, target)
if (idx 0)
{
cat(NOT found\n)
} else
cat(Found at position , idx, \n)
Esmail
in :-) My own solution
doesn't seem to work quite correctly as I found out from some
further testing .. so the solutions posted here are much appreciated!
Esmail
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# determine which data matches
matches - t(pop) == target # 't' due to matching in column order
# colSums equal to COLS will indicate matches
which(colSums(matches) == COLS)
Neat! .. somewhat similar to the solution I came up with in the
meantime, only yours works :-)
Thanks Jim.
Esmail
trivial,
but did not succeed. I still hope/assume this is a trivial thing
to do if one knows R well)
Thanks,
Esmail
ps: I want to thank everyone again who posted their solutions
to my previous query. Seeing different solutions for the same
problem is a tremendously effective way to learn
Hi Erik,
Erik Iverson wrote:
Esmail -
Are these 5 vectors of data stored in a data.frame? I assume so.
Yes, I do a simple load() call first to read the .rda file ...
test2 - transform(test, d = 2*a + b, e = 3*c)
save(test2, file = test2.Rdata)
Does this help?
Yes it does
jim holtman wrote:
yourDF - cbind(yourDF, f=yourDF$a+yourDF$b, g=yourDF$a * 3,
h=yourDF$c + yourDF$d)
Thanks Jim, I also learned about the transform() method from Erik
which will also work beautifully.
Esmail
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rather than tinker with it, you could
do much worse than Ubuntu.
I installed R via the package manger a month ago or so, very easy
and trouble free.
Hope that helps,
Esmail
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. Are you curious about Linux and Ubuntu? Trying them out has never been
easier!
For more information see:
http://wubi-installer.org/
Esmail
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message:
package ‘profr’ is not available
any ideas?
Thanks,
Esmail
library(profr)
p - profr(fcn_create_nonissuing_match_by_quarterssinceissue(...))
plot(p)
That should at least help you see where the slow bits are.
Hadley
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Esmail Bonakdarian wrote:
hadley wickham wrote:
Hi,
I tried this suggestion as I am curious about bottlenecks in my own
R code ...
Why not try profiling? The profr package provides an alternative
display that I find more helpful than the default tools:
install.packages(profr
too!
Esmail
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Bill Cunliffe wrote:
For example, based on a certain condition, I may want to exit my code early:
# Are there the same number of assets in prices and
positions?
if (nAssetPositions != nAssetPrices) {
cat(Different number of assets! \n\n)
Hi Duncan,
Duncan Murdoch wrote:
Duncan Murdoch wrote:
Esmail Bonakdarian wrote:
Hello all,
I have a matrix of bit values.
I compute certain values based on the bits in each row. There may be
*duplicate* entries in the matrix, ie several rows may be identical.
These rows change over time
?
The reason for apply was that it was more concise but not
necessarily more efficient.
Esmail
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the 4 I show above. I hope this made some sense.
Thanks,
Esmail
ps: If it makes sense to preprocess X1,X2,X3 and X4 to generate a new
file that contains the values for
X1, X2, X3, X4, I(X1^2), I(X2^2), I(X3^2), I(X4^2), X1*X2, X1*X3, X1*X4
,X2*X3, X2*X4, X3*X4
is there an easy way
knows more about
R can come up with an answer.
HTH
Esmail
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Prof Brian Ripley wrote:
On Tue, 20 May 2008, Esmail Bonakdarian wrote:
Edward Wijaya wrote:
Hi,
Currently the R script I have is executed with this command:
$ R CMD BATCH mycode.R
And the output is stored in mycode.Rout.
Is there a way I can issue command from shell (like above)
so
,
Esmail
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if it has to do with the fact that both
of us use gmail to post to the list?
In any case, regardless if we see them, they are getting posted,
which is what matters :)
Cheers,
Esmail
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Charilaos Skiadas wrote:
On May 13, 2008, at 5:52 AM, Esmail Bonakdarian wrote:
Tony Plate wrote:
You probably should check this section in your R-help subscription
options (via https://stat.ethz.ch/mailman/options/r-help/, I think):
Receive your own posts to the list?
Tony,
Like jt I
Greg Snow wrote:
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Esmail Bonakdarian
Sent: Sunday, May 11, 2008 7:25 AM
To: Prof Brian Ripley
Cc: [EMAIL PROTECTED]
Subject: Re: [R] Random number generation
[snip]
What I read doesn't seem
://vgoulet.act.ulaval.ca/en/ressources/emacs/
HTH,
Esmail
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and provide commented, minimal, self-contained
* comments
with scripts? A la /* ... */ like it's done in Java or C/C++? Ie comment
more than just one line at a time.
From what I have read this is not possible in R (at least not easily), but
I am eager for someone to contradict me :-)
Thanks,
Esmail
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Hello there,
Prof Brian Ripley wrote:
On Sun, 11 May 2008, Esmail Bonakdarian wrote:
Stephan Kolassa wrote:
Have you tried successively removing/commenting parts of the script
before the sample() command until the problem goes away? That way you
should be able to pinpoint the offending
, m2)
result
}
Seems to work ok.
Thanks,
Esmail
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probably there, but not that clear to me.
Thanks for showing me something more R'ish.
Esmail
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.
Best,
Esmail
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Hello,
Still a newbie with R, though I have learned a lot from reading
this list. I'm hoping someone can help with this question:
I have two vectors, one for variables, and one for bits.
I want to build a string (really a formula) based on the values in my
vector of 1s and 0s in bits. If I
Jorge Ivan Velez wrote:
Hi Esmail,
Try this:
vars=c('X.1', 'X.2', 'X.3', 'X.4', 'X.5')
bits=c(1, 0, 1, 1, 0)
paste(vars[which(bits==1)],collapse=+)
HTH,
Jorge
Wow .. that is beautiful :-) .. and exactly what I was looking
for (and suspected existed).
I ended up doing this:
eqn=(paste
=))
simpleData- transform(simpleData, name=(simpleData[,i]^2))
}
print(simpleData)
Any suggestions/hints .. I've searched the FAQ and web (this is how I
came across the get() function) but no luck so far.
Thanks,
Esmail
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like me.
Thanks all,
Esmail
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible
, the amount of messages per day
is simply amazing, I can hardly keep up. Do most of you read this
on the web or get it as digest? I am getting them as individual
e-mails (thank god for filters) ... :-)
Esmail
_
Back to work after babyhow do
I realize the R developers are probably overwhelmed and have little time
for this, but the documentation really needs some serious reorganizaton.
A good through description of basic variable types would help a lot,
e.g. the difference between lists, arrays, matrices and frames.
Agreed,
Thank you Rob, I just downloaded it and it looks very useful.
In the meantime I think I solved my immediate problem (and while
pluggin' away also deepened my understanding - or so I will at least
claim :-)
Esmail
I don't know if you will find this helpful, but one of the better online
.. but if anyone has some other favorite sites
they want to recommend please do so)
Thanks,
Esmail
ps: I there a USENET group dedicated to R?
pps: I am also exploring ways of calling R functions from Java, if
anyone has any comments regarding that please share
Hello!
Dear Esmail,
you really have to have a look at some introduction to R (e.g.
http://cran.r-project.org/doc/manuals/R-intro.pdf), but see the Manual
section in R website (http://www.r-project.org/). That would answer many
of your questions.
point well taken, I am a bit
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