Re: [R] Plotting directly to memory?

On Sun, May 28, 2023 at 1:46 PM Duncan Murdoch wrote: > > Is there a way to open a graphics device that plots entirely to an array > or raster in memory? I'd prefer it to use base graphics, but grid would > be fine if it makes a difference. > > For an explicit example, I'd like to do the

Re: [R] Rstudio does not run on ubuntu 20

On Mon, Jun 15, 2020 at 2:47 PM Luigi Marongiu wrote: > > Hello, > all of a sudden rstudio stopped working on ubuntu 20.04. I > re-installed from `rstudio-1.3.959-amd64.deb` but it does not launch > even if there is an icon. On terminal I got: > ``` > $ rstudio > rstudio: error while loading

Re: [R] Rtools required

On Wed, Apr 29, 2020 at 11:37 PM Steven wrote: > > Hello John, > > Perhaps you can help me. I am an idiot. I visited the Rtools web page > and learn to run the following lines in R: Still I am getting the same > warning message. > > > writeLines('PATH="${RTOOLS40_HOME}\\usr\\bin;${PATH}"', con =

Re: [R] Can't rsync extsoft/3.6 when compiling R 3.6

On Thu, May 2, 2019 at 9:36 AM Martin Maechler wrote: > > > Shuguang Sun > > on Thu, 2 May 2019 12:57:37 +0800 writes: > > > Hi all, > > When I try to compile R 3.6 in windows 10 in Rtools35, it raised the > error message: > > --8<---cut

Re: [R] Problem installing libxml2 under Homebrew

You probably have a malconfigured homebrew installation of R. On MacOS it is recommended to use the CRAN version of R https://cran.r-project.org/bin/macosx/. The homebrew version depends on gcc compilers and does not support cran binary packages. If you really want to use the homebrew R try

Re: [R] JSONlite import problem

On Sat, Oct 24, 2015 at 1:35 PM, Duncan Murdoch wrote: > > > However, editing the file with a text editor to create "proper" EOF > > doesn't help. > > The problem is that you have valid-looking JSON objects on each odd > numbered line, separated by single blank lines.

Re: [R] Installing pre-compiled R in Linux

> On Tue, Oct 6, 2015 at 9:42 PM, Sasikumar Kandhasamy > wrote: >> Thanks a lot Mike. The Linux distribution we use is "Red Hat Enterprise >> Linux Server release 6.2". On RHEL and CentOS the easiest and most reliable way to get R and R packages is via EPEL. Simply add the

Re: [R] How to access https page

On Mon, Mar 9, 2015 at 3:39 PM, Hui Du hui...@savvyrookies.com wrote: readLines(url) Error in file(con, r) : cannot open the connection In addition: Warning message: In file(con, r) : unsupported URL scheme Try: library(curl) readLines(curl(url)) [[alternative HTML version

Re: [R] Failure to execute R CMD SHLIB successfully

On Sat, Jan 31, 2015 at 1:36 PM, Fisher Dennis fis...@plessthan.com wrote: followed by a series of errors: gcc -m32 -shared -s -static-libgcc -o ../compiled/Windows32.so tmp.def ConvertSAS.o CKHashTable.o readstat_convert.o readstat_bits.o readstat_io.o readstat_sas.o

Re: [R] Install R on linux Mint

On Wed, Jan 14, 2015 at 7:40 PM, Jeroen Ooms jeroen.o...@stat.ucla.edu wrote: Try 'precise' instead of 'utopic' I meant 'trusty'. The version should match the underlying ubuntu: http://www.linuxmint.com/oldreleases.php __ R-help@r-project.org mailing

Re: [R] Install R on linux Mint

Try 'precise' instead of 'utopic' On Wed, Jan 14, 2015 at 7:31 PM, John Sorkin jsor...@grecc.umaryland.edu wrote: I am trying to install R on Linux mint 17.1. I followed the instructions found on CRAN and got a messages about unmet dependencies. I detail below the steps I took: I added deb

[R] Updates from the useR! 2014 organizing committee

Hi all, We are exactly one month away from the useR! 2014 conference [1]. Time for an update from the organizing committee. This weekend, registrations passed the 500 mark, which is a new record for useR! according to data collected by Gergely Daróczi [2]. Yet, there is plenty of additional

[R] Call for abstracts to present at useR! 2014

We are happy to inform you that abstract submission for useR! 2014 is now available online, see http://user2014.stat.ucla.edu/ The R User Conference, useR! 2014 is scheduled for July 1-3, 2014 at the University of California, Los Angeles. Before the official program, half-day tutorials will

[R] flatten lists

I am looking for a function to flatten a list to a list of only 1 level deep. Very similar to unlist, however I don't want to turn it into a vector because then everything will be casted to character vectors: x - list(name=Jeroen, age=27, married=FALSE, home=list(country=Netherlands,

Re: [R] flatten lists

...@gmail.com wrote: do.call(c, x) maybe? On Tue, Jun 26, 2012 at 02:25:40PM -0700, Jeroen Ooms wrote: I am looking for a function to flatten a list to a list of only 1 level deep. Very similar to unlist, however I don't want to turn it into a vector because then everything will be casted

Re: [R] flatten lists

- From: Jeroen Ooms jeroen.o...@stat.ucla.edu To: Neal Fultz nfu...@gmail.com Cc: r-help@r-project.org Sent: Tuesday, June 26, 2012 6:23 PM Subject: Re: [R] flatten lists Hmm that doesn't seem to work if the original list is nested more than 2 levels deep. I should have probably given

[R] issues with read.spss

Someone supplied me with an SPSS datafile that caused a buffer overflow and then a crash when reading it in R. Unfortunately I can't supply the dataset at hand and I have a hard time reproducing it with a toy example. But I found at least 2 issues that might be related. I would like to know which

Re: [R] Standardized beta-coefficients in regression

Unfortunately I found myself in the same position as outlined above, where I was requested to reproduce 'standardized regression coefficients' as reported by SPSS. Below an example that produces something very similar to the results table from an SPSS Linear Regression procedure, including the

Re: [R] Save generic plot to file (before rendering to device)

Bumping this one up because the 'before.plot.new' solution turned out to be sub-optimal after all. It should be possible to do this with a before.plot.new hook, right? Yes, sure, if you treat the first and last plot separately. It turns out that the before.plot.new hook does not is not

Re: [R] Save generic plot to file (before rendering to device)

Thanks I didn't know about that. I ended up with something like this. Is there a more elegant way to do it? myplots - list(); hasplots - FALSE; setHook(before.plot.new, function(...) {     if(hasplots == FALSE){       hasplots - TRUE;     } else {       myplots[[length(myplots)+1]] -

Re: [R] Save generic plot to file (before rendering to device)

Of Jeroen Ooms Sent: Monday, July 11, 2011 12:22 PM To: David Winsemius Cc: r-help@r-project.org Subject: Re: [R] Save generic plot to file (before rendering to device) You can also save a data (or function) object to an .Rdata file with save(objname, file=filename.Rdata) and your colleagues could

Re: [R] Save generic plot to file (before rendering to device)

You can also save a data (or function) object to an .Rdata file with save(objname, file=filename.Rdata) and your colleagues could then load(filename.Rdata) in R. Thanks for the responses. I found an old post by Gabor Grothendieck that shows what I want. Basically the trick is to save the

[R] unwanted coercion using apply

I need to convert a dataframe to a record-structure, to be able to encode it later in JSON. Suppose this is the data: mydata - data.frame(foo=1:3, bar=c(M,M,F)); I would like to convert this to a unnamed list (json array) of key-value pairs. For example like this: apply(data.frame(foo=1:3,

Re: [R] unwanted coercion using apply

apply() operates on arrays and a data frame will be coerced to a matrix (which requires all elements to be of the same type). This is documented in ?apply. Thanks, I was not aware of that. I implicitly assumed there would be a specific apply.data.frame. This may not be elegant, but why

[R] regressing on variable with heavy tails

I have a dependent variable with is very peaked and has heavy tails, something I haven't encountered before. (histogram: http://postimage.org/image/2sw9bn8pw/). What could be an appropriate family or transformation to do regress on this?-- View this message in context:

[R] matrix of higher order differences

Is there an easy way to turn a vector of length n into an n by n matrix, in which the diagonal equals the vector, the first off diagonal equals the first order differences, the second... etc. I.e. to do this more efficiently: diffmatrix - function(x){ n - length(x); M - diag(x);

[R] Read function that detects format automatically

I was wondering if there exists a function that automatically tries to detect the format of a datafile. E.g. if it is an ascii datafile, that it can detect appropriate defaults for the read.table() parameters. One could for example read the first 10 lines of the file and analyze the format of the

Re: [R] detect filetype (as in unix 'file')

No, but what is wrong with using system()? The application is running in a very sandboxed environment and might not have permission to execute 'file'. 'file' is large and complex because it tries to be comprehensive (but it still does not know about some common systems, e.g. 64-bit Windows

[R] detect filetype (as in unix 'file')

Is there a way in R (in Linux) to detect the type of a file without invoking a shell? E.g to do this: system(file density.plot) density.plot: PDF document, version 1.4 but without using system()? I tried file() and file.info(), but both do display the information I am looking for. -- View

Re: [R] svg malformed on CentOS (epel R)

The problem has been resolved thanks to Tom Callaway from Redhat: Tom Callaway wrote: Looking at the R source code, it uses Cairo to do the SVG creation, and the Cairo in RHEL-5 is very (very) old (1.2.4). Digging through Cairo's changelogs post 1.2.4, I came across this: SVG: Fix bug

Re: [R] recursive do.call

it this way... Cheers Felix On 14 March 2011 14:24, Jeroen Ooms jeroeno...@gmail.com wrote: I would like to define a recursive equivalent to call or do.call, which takes a vector of multiple function names and 'chains' them, by greedy matching of arguments down the chain. For example, I would

Re: [R] recursive do.call

to print.default), and then there is S4 to think about. Also, can arguments be matched by partial names? Can they be given in the argument list without a name? My point is that you had better have a good reason to want to do it this way... Cheers Felix On 14 March 2011 14:24, Jeroen

[R] svg malformed on CentOS (epel R)

There is an issue with the default svg device on a centos workstation that I am using. It does not result in an error, but it produces malformed svg images. Exactly the same script works just fine on an ubuntu box. On Ubuntu I am using R binary that comes with maverick, on centos I am using the

[R] recursive do.call

I would like to define a recursive equivalent to call or do.call, which takes a vector of multiple function names and 'chains' them, by greedy matching of arguments down the chain. For example, I would like to be able to do: rec.do.call(c(glm,coef,print), list(formula=dist~speed, digits=3,

Re: [R] getting attributes of list without the names.

into infinite recursion if every list's attributes is another list with at least a 'names' attribute? On Tue, Mar 1, 2011 at 2:30 AM, Duncan Murdoch murdoch.dun...@gmail.comwrote: On 11-02-28 11:17 PM, Jeroen Ooms wrote: I am trying to encode arbitrary S3 objects by recursively looping

[R] getting attributes of list without the names.

I am trying to encode arbitrary S3 objects by recursively looping over the object and all its attributes. However, there is an unfortunate feature of the attributes() function that is causing trouble. From the manual for ?attributes: The names of a pairlist are not stored as attributes, but are

[R] Parsing JSON records to a dataframe

What is the most efficient method of parsing a dataframe-like structure that has been json encoded in record-based format rather than vector based. For example a structure like this: [ {name:joe, gender:male, age:41}, {name:anna, gender:female, age:23} ] RJSONIO parses this as a list of lists,

Re: [R] Chrooted R + Rserve

I am trying to reproduce this setting, but it does not seem to work anymore. I keep getting the error: execve failed: No such file or directory. One of the reasons is that /usr/local/bin/Rserve is no longer a standalone executable, and is now initiated using R CMD Rserve. However, after making

[R] Setting R_Interactive

We're using Rserve as a back-end in our application. A problem that we experienced is that the Rserve connection gets stuck when R is asking for some kind of user interaction. For example, when executing an 'install.packages' command for the first time without specifying the repos argument, R

[R] read.table behavior for Dates.

When read.table imports a table that includes a header called 'Date', it tries to recognize the date format. For example, if one imports this data from Yahoo finance, the Date column is automatically transformed to Y-m-d, whereis in the data it appears as m/d/Y: myData -

Re: [R] read.table behavior for Dates.

Yes I know I can manually do it, but I am using it for scripts in which users upload files. Hence, I don't know what's going to come; I don't know on before hand whether data will contain Dates, and in which columns they appear. This is why I was surprised that read.table has some (undocumented)

Re: [R] read.table behavior for Dates.

Ah Phil Spector is right, nothing is converted. I'm almost too embarrassed to admit it, but actually, it was Excel that tricked me. It displays date fields differently than they are stored in the csv file, and once you press 'save', it saves everything to a different format, completely unasked.

[R] [announce] yeroon.net/ggplot2 web application v0.2

A new version of the ggplot2 web interface has been released. Info and a demo video are available here: http://www.stat.ucla.edu/~jeroen/ggplot2/. The new version has a lot of new features, like advanced data import, integration with Google docs, converting variables from numeric to factor to

Re: [R] yeroon.net/ggplot2 web application v0.11

Fishery Biologist Department of the Interior US Fish Wildlife Service California, USA --- On Sun, 12/6/09, Jeroen Ooms jeroen.o...@stat.ucla.edu wrote: From: Jeroen Ooms jeroen.o...@stat.ucla.edu Subject: [R] yeroon.net/ggplot2 web application v0.11 To: r-help@r-project.org Date: Sunday

[R] yeroon.net/ggplot2 web application v0.11

A new version of the ggplot2 web application is available at http://www.yeroon.net/ggplot2. New features include 1D geom’s (histogram, density, freqpoly), syntax mode (by clicking the tiny arrow at the bottom), and some additional facet options. Furthermore some minor improvements and fixes, most

[R] multivariate numerical integration.

integration? - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://old.nabble.com/multivariate-numerical-integration.-tp26164395p26164395

[R] 1 dimensional optimization with local minima

. What could be an appropriate package or function for one-dimensional bounded optimization, that includes some protection against local minima? - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my

[R] Announce: lme4 web application

feedback/suggestions/bugreports are welcome of course. note: because this is a public demo server, R sessions are currently limited to 40seconds. If you experience timeouts, try again later (server can be busy). Thank you! Jeroen - Jeroen Ooms * Dept. of Methodology and Statistics

[R] [Hmisc] Latex to pdf

on file643c9869.dvi (1 page, 372 bytes). Transcript written on file643c9869.log. Error: Can't open display: - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View

[R] Convert dataframe to array of records

keeping the datatypes for every field? - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Convert-dataframe-to-array

[R] Anova over a list of models

argument? - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Anova-over-a-list-of-models-tp25311985p25311985

Re: [R] Anova over a list of models

2009/9/5 Henrique Dallazuanna www...@gmail.com Try this: anova(myModels[[1]],myModels[[2]]) do.call(anova, myModels) Does this work for you? Both functions are failing here: anova(myModels[[1]],myModels[[2]]) Error in names(mods) - sapply(as.list(mCall)[c(FALSE, TRUE, modp)], as.character)

[R] Problem Installing R 2.9.1.1 RHEL x86_64 binary

by R-devel-2.9.1-1.el5.x86_64 What could be the problem? - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/Problem

[R] popular R packages

! - Jeroen Ooms * Dept. of Methodology and Statistics * Utrecht University Visit http://www.jeroenooms.com www.jeroenooms.com to explore some of my current projects. -- View this message in context: http://www.nabble.com/popular-R-packages-tp22391260p22391260.html Sent from the R

Re: [R] popular R packages

I agree with Thomas, over the years I have installed R on at least 5 computers. I don't see why per-marchine statistics would not be useful. When you installed a package on five machines, you probably use it a lot, and it is more important to you than packages that you only installed once.

[R] lme4 and Variable level detection

crosslevel interactions without a random slope for the lower level variable. Now I'm confused. Is there a fundamental difference between a crosslevel interaction, or is the same thing as a regular interaction when the model also holds an error term for the lower level variable? - Jeroen Ooms * Dept

[R] package install error in CentOS

I am trying to install package Cairo on CentOS 5.2, but I keep getting this error: * Installing *source* package 'Cairo' ... /usr/lib64/R/bin/INSTALL: ./configure: /bin/sh: bad interpreter: Permission denied ERROR: configuration failed for package 'Cairo' ** Removing '/usr/lib64/R/library/Cairo'

[R] png() and jpg() devices acting weird.

I use a CentOS 5.2 VPS to generate graphs through an R web-application. I generate generate both pdf() and png() formats of the graphs. The pdf works just fine and generates perfect pictures. However, the figures generated by the png() (and also the jpg) device are messed up. The weird thing is

Re: [R] package install error in CentOS

); thank you :) Jeffrey Horner wrote: Check that your data partitions have the 'exec' flag set in /etc/fstab, particulary the /tmp partition: http://www.centos.org/modules/newbb/viewtopic.php?topic_id=1687forum=31 Jeff Jeroen Ooms wrote: I am trying to install package Cairo on CentOS

[R] a ratio-variable predictor

Maybe this is more of a statistical question than an R question, but I am going to ask it anyway :) Cortisol and Testosteron are known to interact in the body, and some literature suggest that especially the ratio between the two is a good predictor. So I want to add the ratio predictor

[R] Multivariate kernel density estimation

I would like to estimate a 95% highest density area for a multivariate parameter space (In the context of anova). Unfortunately I have only experience with univariate kernel density estimation, which is remarkebly easier :) Using Gibbs, i have sampled from a posterior distirbution of an Anova

Re: [R] plotting density for truncated distribution

thank you, both solutions are really helpful! -- View this message in context: http://www.nabble.com/plotting-density-for-truncated-distribution-tp20684995p20703469.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org

[R] plotting density for truncated distribution

I am using density() to plot a density curves. However, one of my variables is truncated at zero, but has most of its density around zero. I would like to know how to plot this with the density function. The problem is that if I do this the regular way density(), values near zero automatically

Re: [R] R 2.8.0 is released

I'm getting a unexpected compiling error when doing make: gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -g -O2 -c platform.c -o platform.o platform.c: In function

Re: [R] R 2.8.0 is released

I'm getting a unexpected compiling error when doing make: gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -g -O2 -c platform.c -o platform.o platform.c: In function

Re: [R] drop1() seems to give unexpected results compare to anova()

Thomas Chu wrote: Neither of those 3 lines of commands managed to drop x4 and its P value magically decreased from 0.94 to almost 0! I am also baffled by how R calculated those RSS. Maybe it is using a different type of SS. If i have a lm() model, and i do:

[R] Link functions in SEM

Is it possible to fit a structural equation model with link functions in R? I am trying to build a logistic-regression-like model in sem, because incorporating the dichotomous variables linearly seems inappropriate. Mplus can do something similar by specifying a 'link' parameter, but I would like

Re: [R] Object-oriented programming in R for Java programmers?

Werner Wernersen wrote: I have done oo programming in C++ and Java before but the first few tutorial on R oo were a bit confusing for me. My personal experience is that the type of OO programming that makes for example Java code nice and easy to structure is not possible in R. The biggest