Re: [R] Requesting solution for R package

2023-04-24 Thread Ivan Krylov
В Sat, 22 Apr 2023 07:44:11 +0900 Kasun Thalgaskotuwa пишет: > My research is based on dynamic causal modelling. Hence I am finding > some R package which is useful for me. There's a search system at <https://search.r-project.org/?P=%22dynamic+causal%22==10=r-manuals=r-help=cran-views=

Re: [R] [External Email] Requesting solution for R package

2023-04-24 Thread Christopher Ryan via R-help
ne application of R. My research is based on dynamic > causal modelling. Hence I am finding some R package which is useful for me. > that is “dcm”. I want to activate this package to work with dcm, DCM > functions( dynamic causal model). I kindly expect your help in this reg

[R] Requesting solution for R package

2023-04-24 Thread Kasun Thalgaskotuwa
Dear R team, I am struggling with one application of R. My research is based on dynamic causal modelling. Hence I am finding some R package which is useful for me. that is “dcm”. I want to activate this package to work with dcm, DCM functions( dynamic causal model). I kindly expect your help

Re: [R] package elevatr doesn't contain get_elev_raster()

2023-04-22 Thread Rusty Travis
On 4/22/23 00:46, Ivan Krylov wrote: > On Sat, 22 Apr 2023 00:18:09 -0700 > Rusty Travis wrote: >> install.packages('elevatr') completes successfully, but "Error: >> object 'get_elev_raster' not found" is a problem. >> >> Did you load the package using library(elevatr) after installing it? >> >>

Re: [R] package elevatr doesn't contain get_elev_raster()

2023-04-22 Thread Ivan Krylov
On Sat, 22 Apr 2023 00:18:09 -0700 Rusty Travis wrote: > install.packages('elevatr') completes successfully, but "Error: > object 'get_elev_raster' not found" is a problem. Did you load the package using library(elevatr) after installing it? Alternatively, elevatr::get_elev_raster should also

[R] package elevatr doesn't contain get_elev_raster()

2023-04-22 Thread Rusty Travis
I installed R-4.3.0 in Debian 11 Linux and wish to plot elevation data perspectives. install.packages('elevatr') completes successfully, but "Error: object 'get_elev_raster' not found" is a problem. How to solve, please? [[alternative HTML version deleted]]

Re: [R] Package Caret

2023-04-16 Thread Bert Gunter
It doesn't. namesraum = namespace which is technically different than a paket = package (as you, as a German speaker, know of course). I leave it to you to search for suitable references on the details of what these are in R, unless someone wiser than I offers a mini-tutorial here. But glad I

Re: [R] Package Caret

2023-04-16 Thread Uwe Ligges
On 17.04.2023 00:19, Gábor Malomsoki wrote: Many thanks Bert, now is ok, i did not know that "Namensraum" should mean a package Two hints: 1. The NAMESPACE is meant and he trnlsation is very literal here. 2. I typically have LANGUAGE=en set for R to avoid confusion. Best, Uwe Ligges

Re: [R] Package Caret

2023-04-16 Thread Gábor Malomsoki
Many thanks Bert, now is ok, i did not know that "Namensraum" should mean a package Am So., 16. Apr. 2023 um 23:44 Uhr schrieb Bert Gunter < bgunter.4...@gmail.com>: > So update the vctrs package to the latest version first before loading > R-tools (or the caret package, specifically)? > > --

Re: [R] Package Caret

2023-04-16 Thread Bert Gunter
So update the vctrs package to the latest version first before loading R-tools (or the caret package, specifically)? -- Bert On Sun, Apr 16, 2023 at 1:57 PM Gábor Malomsoki wrote: > > I have newly installed R, R-tools, RStudio, but still not working: > > library(caret)Lade nötiges Paket:

Re: [R] Package Caret

2023-04-16 Thread Gábor Malomsoki
I have newly installed R, R-tools, RStudio, but still not working: library(caret)Lade nötiges Paket: latticeError: Laden von Paket oder Namensraum für ‘caret’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): fehlgeschlagen Namensraum ‘vctrs’ 0.5.2 ist bereits geladen, aber

Re: [R] Package Caret

2023-04-14 Thread Duncan Murdoch
You should post the result of running sessionInfo(), and tell us how you installed R. Your installation seems very broken. Duncan Murdoch On 14/04/2023 3:45 a.m., Gábor Malomsoki wrote: This is the error then: error in prettyseq(1:ncol(out)) : could not find function "prettyseq" Eric

Re: [R] Package Caret

2023-04-14 Thread Eric Berger
prettyseq() is in the seqinr package. That seems to usher in a lot of other issues. How about caTools::sample.split() ? (I have never used it, I just learned about it from a search) https://rdrr.io/cran/caTools/src/R/sample.split.R Good luck, Eric On Fri, Apr 14, 2023 at 10:50 AM Gábor

Re: [R] Package Caret

2023-04-14 Thread Gábor Malomsoki
Or is there any similar function to split the dataframe to trainDF and testDF? Gábor Malomsoki schrieb am Fr., 14. Apr. 2023, 09:45: > > This is the error then: > error in prettyseq(1:ncol(out)) : could not find function "prettyseq" > > > > > Eric Berger schrieb am Fr., 14. Apr. 2023, 09:06: >

Re: [R] Package Caret

2023-04-14 Thread Gábor Malomsoki
This is the error then: error in prettyseq(1:ncol(out)) : could not find function "prettyseq" Eric Berger schrieb am Fr., 14. Apr. 2023, 09:06: > What happens if you do the following? > > library(caret) > > ?caret::createDataPartition > > i.e. to confirm that caret is loaded, seek help on

Re: [R] Package Caret

2023-04-14 Thread Eric Berger
What happens if you do the following? > library(caret) > ?caret::createDataPartition i.e. to confirm that caret is loaded, seek help on this function On Fri, Apr 14, 2023 at 9:56 AM Gábor Malomsoki wrote: > Eric, > > Yes, i know, i am calling the package, but this is not working. > I saw a

Re: [R] Package Caret

2023-04-14 Thread Gábor Malomsoki
Eric, Yes, i know, i am calling the package, but this is not working. I saw a similar question in Stackoverflow, advising install package Rcpp, but this one i am unable to install. Eric Berger schrieb am Fr., 14. Apr. 2023, 08:47: > You first have to load the package using the library command.

Re: [R] Package Caret

2023-04-14 Thread Eric Berger
You first have to load the package using the library command. > library(caret) Then you can call createDataPartition. e.g. > data(oil) > createDataPartition(oilType,2) HTH, Eric On Fri, Apr 14, 2023 at 7:52 AM Gábor Malomsoki wrote: > Dear all, > When i try to use createDataPartition after

[R] Package Caret

2023-04-13 Thread Gábor Malomsoki
Dear all, When i try to use createDataPartition after calling package 'caret', i get the message: "could not find function createDataPartition" I use: R-4.2.3 for Windows RStudio-2023.03.0-386 Do you have any experience with this failure? Thank you! Best regards Gabor [[alternative

Re: [R] package sare not loading and/or installing

2023-01-31 Thread Ivan Krylov
On Tue, 31 Jan 2023 13:12:46 + Phil Smith via R-help wrote: > Some of these install with no problem. However, most of them give an > error messages that looks like: > > Warning in install.packages : > installation of package ‘curl’ had non-zero exit status I'm using my psychic debugging

[R] package sare not loading and/or installing

2023-01-31 Thread Phil Smith via R-help
Hello R-Help People! I had to reinstall my operating system... and reinstall R. I am having trouble with reinstalling packages: install.packages(c( "curl")) install.packages(c( "quantmod")) install.packages(c( "TTR")) install.packages(c( "xts")) install.packages(c( "zoo")) install.packages(c(

Re: [R] package FactoMineR

2023-01-24 Thread varin sacha via R-help
ersions. Probably simple ... in function definition and print(plot(res, axes > = axes, ...)) addition could do the trick, but I am not sure. > > Cheers > Petr > >> -Original Message- >> From: R-help On Behalf Of varin sacha via R- >> help >>

Re: [R] package FactoMineR

2023-01-24 Thread PIKAL Petr
PM > To: r-help@r-project.org > Subject: [R] package FactoMineR > > Dear R-experts, > > Here below the R code working (page 8 http://www2.uaem.mx/r- > mirror/web/packages/FactoMineR/FactoMineR.pdf). > > But I am trying to get all the labels (the writes) : comfort, unive

Re: [R] package FactoMineR

2023-01-23 Thread Rui Barradas
Às 18:38 de 23/01/2023, varin sacha via R-help escreveu: Dear R-experts, Here below the R code working (page 8  http://www2.uaem.mx/r-mirror/web/packages/FactoMineR/FactoMineR.pdf). But I am trying to get all the labels (the writes) : comfort, university, economic, world, ... smaller. How

[R] package FactoMineR

2023-01-23 Thread varin sacha via R-help
Dear R-experts, Here below the R code working (page 8  http://www2.uaem.mx/r-mirror/web/packages/FactoMineR/FactoMineR.pdf).  But I am trying to get all the labels (the writes) : comfort, university, economic, world, ... smaller.  How could I do that ? Many thanks. library(FactoMineR)

[R] Explanation required for the examples given for the 'curl' function in the 'r' package 'calculus'

2022-11-29 Thread Winod Dhamnekar
Hello sir, In the Reference manual given by Cran.r-project.org, the following examples for the function 'curl' are given. I know how to compute 'curl' in octave. I can use HP 50g calculator to compute curl of a vector field to compute line integrals using Stokes's theorem. I compute curl of a

Re: [R] IGCI implemented in R package ?

2022-11-23 Thread Jeff Newmiller
> > HTH, >> > Eric >> > >> > >> >> On Mon, Nov 21, 2022 at 9:00 PM varin sacha via R-help < >> r-help@r-project.org> wrote: >> >> Dear R experts, >> >> >> >> Google is

Re: [R] IGCI implemented in R package ?

2022-11-23 Thread Bert Gunter
> > > >> On Mon, Nov 21, 2022 at 9:00 PM varin sacha via R-help < > r-help@r-project.org> wrote: > >> Dear R experts, > >> > >> Google is very often my friend but this time it does not ! > >> Are you aware of an R package in which the directed c

Re: [R] IGCI implemented in R package ?

2022-11-23 Thread varin sacha via R-help
s://fentechsolutions.github.io/CausalDiscoveryToolbox/html/index.html > > HTH, > Eric > > >> On Mon, Nov 21, 2022 at 9:00 PM varin sacha via R-help >> wrote: >> Dear R experts, >> >> Google is very often my friend but this time it does not ! >> Are you

Re: [R] IGCI implemented in R package ?

2022-11-21 Thread Eric Berger
/CausalDiscoveryToolbox/html/index.html HTH, Eric On Mon, Nov 21, 2022 at 9:00 PM varin sacha via R-help wrote: > Dear R experts, > > Google is very often my friend but this time it does not ! > Are you aware of an R package in which the directed causal discovery > algorithm called the Information G

[R] IGCI implemented in R package ?

2022-11-21 Thread varin sacha via R-help
Dear R experts, Google is very often my friend but this time it does not ! Are you aware of an R package in which the directed causal discovery algorithm called the Information Geometric Causal Inference (IGCI) of (Daniusis et al., 2010) is implemented ? Best, Sacha Envoyé de mon iPhone

Re: [R] R-package imputeTS / warning messages

2022-11-04 Thread Ivan Krylov
Dear Paulo Barata, On Wed, 26 Oct 2022 11:27:54 -0300 Paulo Barata wrote: > In stats::StructTS(data, ...) : >possible convergence problem: 'optim' gave code = 52 and message > ‘ERROR: ABNORMAL_TERMINATION_IN_LNSRCH’ > > The function StructTS is called by the function na_kalman of the >

[R] R-package imputeTS / warning messages

2022-10-26 Thread Paulo Barata
Dear colleagues, For data imputation in time series, I am using the R-package imputeTS, using its funcion na_kalman. For some calls to that funcion, I get the following warning message: In stats::StructTS(data, ...) : possible convergence problem: 'optim' gave code = 52 and message

Re: [R] installing an R package

2022-04-28 Thread Bogdan Tanasa
Thank you all for your time and suggestions. The issue is that install.package() does not work, because of large file size, but at the end I have solved it by using /; options(timeout=1 On Thu, Apr 28, 2022 at 4:01 PM Uwe Ligges wrote: > > > On 28.04.2022 23:55, David Winsemius wrote: >

Re: [R] installing an R package

2022-04-28 Thread Uwe Ligges
On 28.04.2022 23:55, David Winsemius wrote: Pretty sure the right way to install that package is with the Bioc installer. or simply install.packages() after setting the repository. Best, Uwe Ligges Sent from my iPhone On Apr 28, 2022, at 3:35 PM, Bogdan Tanasa wrote: HI everyone,

Re: [R] installing an R package

2022-04-28 Thread David Winsemius
Pretty sure the right way to install that package is with the Bioc installer. Sent from my iPhone > On Apr 28, 2022, at 3:35 PM, Bogdan Tanasa wrote: > > HI everyone, > > I must transfer a package from one platform (AWS) where I was able to > install the package > > to another platform

[R] installing an R package

2022-04-28 Thread Bogdan Tanasa
HI everyone, I must transfer a package from one platform (AWS) where I was able to install the package to another platform (local PC), where I am not able to install the package. The package is called : BSgenome.Hsapiens.UCSC.hg38 Is there a way to transfer the files from

Re: [R] Package nlme

2022-04-07 Thread John Fox
, Ontarion, Canada web: https://socialsciences.mcmaster.ca/jfox/ On 4/7/2022 6:30 AM, Rohan Richard via R-help wrote: Dear Help Desk, I am trying to perform a non-linear regression (Sigmoid curves) using the R package nlme. My field trial is a randomised complete block design (RCBD) with 3 blocks

Re: [R] Package nlme

2022-04-07 Thread Bert Gunter
ot; comic strip ) On Thu, Apr 7, 2022 at 4:29 AM Rohan Richard via R-help wrote: > > Dear Help Desk, > > I am trying to perform a non-linear regression (Sigmoid curves) using the R > package nlme. My field trial is a randomised complete block design (RCBD) > with 3 bl

[R] Package nlme

2022-04-07 Thread Rohan Richard via R-help
Dear Help Desk, I am trying to perform a non-linear regression (Sigmoid curves) using the R package nlme. My field trial is a randomised complete block design (RCBD) with 3 blocks and I would like to assess the block effect in the model. Do you know how I can incorporate the block term in nlme

[R] [R-pkgs] spqdep: An R package to test for spatial dependence in categorical spatial data

2022-03-07 Thread Fernando A López Hernández
Dear R users, I am happy to announce that a new package “spqdep” is now available on CRAN. https://cran.r-project.org/web/packages/spqdep/index.html <https://cran.r-project.org/web/packages/spqdep/index.html> The objective of this R-package is to test for spatial dependence in categ

[R] [R-pkgs] Analysis of phylogenetic datasets in R: package "TreeSearch"

2022-01-18 Thread Martin R. Smith
Dear R users, TreeSearch is an R package for phylogenetic analysis, optimized for morphological datasets. Tree search may be conducted using under equal or implied step weights with an explicit (albeit inexact) allowance for inapplicable character entries, avoiding some of the pitfalls inherent

[R] [R-pkgs] qqconf: An R Package for Q-Q Plot Testing Bounds

2021-12-14 Thread Eric Weine
Hello! I've recently released version 1.1.1 of qqconf . I'm publicizing it for the first time as our vignette tutorial is now available. We have also

Re: [R] Package is not available for this version of R.

2021-11-26 Thread Jim Lemon
Hi Amanze, The package is apparently "apsurvival", hosted on GitHub: https://rdrr.io/github/carolinewei/apsurvival/ There seem to be instructions on how to install this, but the maintainer (Caroline Wei?) doesn't seem to have an email address listed. Perhaps the easiest thing for you to do is

Re: [R] Package is not available for this version of R.

2021-11-26 Thread Bert Gunter
You seem to be confused. The package appears to be "prob" containing a function prob.def1(). If I am correct about this, you need to review these materials in your course to proceed. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it."

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Luigi Marongiu
Awesome, thanks! On Wed, Nov 10, 2021 at 10:33 PM Rasmus Liland wrote: > > Dear Luigi, > > Yes, from the named list of dataframes, > you access the demographic table like > that. > > You can remove dput() now, I used it > only to print the output; read ?dput, > it's very handy the next time you

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
Dear Luigi, Yes, from the named list of dataframes, you access the demographic table like that. You can remove dput() now, I used it only to print the output; read ?dput, it's very handy the next time you ask questions on this list. Take a closer look at my obfuscated code ... To

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Luigi Marongiu
I tried this: ``` x = dput(sapply(names(ODB::odb.tables(db)), function(tbl) { sqlQuery <- paste0('SELECT * FROM "', demographic, '"') ODB::odb.read(db, sqlQuery) }, simplify=F)) y = x$demographic ``` so now `y` is the dataframe for the table `demographic`: ``` > y ID Study_ID Hosp_ID

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
On 2021-11-10 18:55 +0100, Luigi Marongiu wrote: > no, it worked. that table was indeed > empty and you for the right entries on > the other table. I'll try on my > machine, thank you! Cheers man! signature.asc Description: PGP signature __

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
Dear Luigi, I tried quoting ... This: odb = ODB::odb.open("proof.odb", jarFile = NULL) dput(sapply(names(ODB::odb.tables(odb)), function(tbl) { sqlQuery <- paste0('SELECT * FROM "', tbl, '"') ODB::odb.read(odb, sqlQuery) }, simplify=F))

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Luigi Marongiu
Sure! I am attaching a simplified version of it. I did not see the quote text; it might be difficult to call all table's names since there are hundreds of columns.. On Wed, Nov 10, 2021 at 4:15 PM Rasmus Liland wrote: > > Are you willing to send me a part of the > the proof.odb so I can run the

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
also Note in ?ODB::odb.read says: To query databases built with OpenOffice or LibreOffice, it may be necessary to quote table and/or column names in ‘sqlQuery’, as the default behavior of the HSQL engine is to convert unquoted table and

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
Are you willing to send me a part of the the proof.odb so I can run the query? R signature.asc Description: PGP signature __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Luigi Marongiu
Thank you. I have used ODB, it looks easier to use (and install since it needs way fewer dependencies than odbc) but I can't run the SQL statement: ``` > library(ODB) Loading required package: DBI Loading required package: RJDBC Loading required package: rJava > db = odb.open("proof.odb", jarFile

Re: [R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Rasmus Liland
Dear Luigi, I found the package ODB https://cran.r-project.org/web/packages/ODB/ODB.pdf and was able to install it after reconfiguring rJava ... The help page ?ODB::odb.open has this example: odbFile <- tempfile(fileext=".odb") odb.create(odbFile, overwrite="do")

[R] how to connect libreoffice base odb using R package odbc?

2021-11-10 Thread Luigi Marongiu
how can I connect to a LibreOffice base odb file using the package odbc for R? I tried with: > library(odbc) > library(DBI) > con <- dbConnect(odbc::odbc(), + driver = "PostgreSQL Driver", + database = "proof.odb", + uid = "", +

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Bill Dunlap
You can define the environment variable R_DONT_USE_TK (to any value) to avoid this hang caused by code in the tkrplot package. You do not have to have an X server running if R_DONT_USE_TK is set. This will avoid potential hangs while installing the 23 packages that depend on tkrplot.

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Bill Dunlap
I tried this a second time, but with --no-byte-compile, and it hung with a slightly different traceback (gdb) where #0 0x7f95bc4c6689 in __fxstat64 () from /usr/lib/x86_64-linux-gnu/libc.so.6 #1 0x7f95bc497050 in opendir () from /usr/lib/x86_64-linux-gnu/libc.so.6 #2 0x7f95b935f1e0

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Brodie, Kent via R-help
Bill-- BINGO.You have found the answer. After some testing on one of my environments where it was always hanging, connecting to the same server with an X-Sever running on my workstation did indeed allow the package to be installed. **GOOD LORD THAT’S RIDICULOUS** But at least I

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Jeff Newmiller
This is a microcosm of why installing "all CRAN" packages is a bad idea. Now extend this to the other 5% of 16000+ packages that will have unclear requirements, and when you have all those installed try to update just one of the packages because one of your users has learned of a bug in that

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Bill Dunlap
I just tried installing forensim on R-devel/Ubuntu 20.04/WSL-2.0 without an X server (hence DISPLAY was not set). Loading tktcl gives a warning that Tk is not available because DISPLAY is not set. The installation hung after the byte-compile message: installing to

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-30 Thread Brodie, Kent via R-help
age- > From: Henrik Bengtsson > Sent: Wednesday, September 29, 2021 9:43 PM > To: Brodie, Kent > Cc: r-help@r-project.org > Subject: Re: [R] Package installation help: Stuck at "** byte-compile and > prepare package for lazy loading" > > ATTENTION: This email origina

Re: [R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-29 Thread Henrik Bengtsson
I just tried on an up-to-date CentOS 7 with R 4.1.1 built from source using gcc 8.3.1 (from SCL devtoolset-8; so not the default gcc 4.8.5), and it works there. If of any help, here's the output when installing to user's personal package library: > chooseCRANmirror(ind = 1) >

[R] Package installation help: Stuck at "** byte-compile and prepare package for lazy loading"

2021-09-29 Thread Brodie, Kent via R-help
Hey everyone! So, I've been asked by one of our researchers to install "all" cran packages on one of our servers.Yeah, it's a bit much (and clearly, not everything will install correctly due to various missing tidbits), but it will go a long way to having to constantly respond to install

[R] [R-pkgs] Announcing R package 'fedmatch'

2021-08-31 Thread Chris Webster
Hello all, We have just released the R package 'fedmatch' to CRAN. Following is a brief description and some links for more information: With an ever-expanding set of financial data providers, each covering many of the same firms and entities, matching data sets that do not share common

Re: [R] Package for "design graphs"

2021-08-17 Thread Jeff Newmiller
Perhaps igraph or DiagrammeR? On August 16, 2021 9:55:50 AM PDT, mad...@gmail.com wrote: >Hi, > >in our course littrature a "design graph" of two factors R and S with >associated maps s : I -> S and f : I -> S where I is some finite index >set, is a graph with factor labeles as vertices and lines

Re: [R] Package for "design graphs"

2021-08-17 Thread Bert Gunter
Have you looked at the gR Task View on CRAN: https://cran.r-project.org/web/views/gR.html (I have no idea whether it's relevant to your query, though). Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed

[R] Package for "design graphs"

2021-08-17 Thread madsmh
Hi, in our course littrature a "design graph" of two factors R and S with associated maps s : I -> S and f : I -> S where I is some finite index set, is a graph with factor labeles as vertices and lines f(i) to s(i) for all observations i in I. Is there a package on CRAN that can draw graphs like

Re: [R] Package installation for 4.1 on windows.

2021-06-10 Thread Witold E Wolski
Dear Duncan, Thank you. Indeed I did had the R_LIBS_USER env. variable defined. Best regards Witold On Mon, 7 Jun 2021 at 17:48, Duncan Murdoch wrote: > > On 07/06/2021 10:37 a.m., Witold E Wolski wrote: > > Hello, > > > > I just installed R 4.1 and now trying to update install some packages.

Re: [R] Package installation for 4.1 on windows.

2021-06-07 Thread Duncan Murdoch
On 07/06/2021 10:37 a.m., Witold E Wolski wrote: Hello, I just installed R 4.1 and now trying to update install some packages. R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing But when installing packages I read: Installing

[R] Package installation for 4.1 on windows.

2021-06-07 Thread Witold E Wolski
Hello, I just installed R 4.1 and now trying to update install some packages. R version 4.1.0 (2021-05-18) -- "Camp Pontanezen" Copyright (C) 2021 The R Foundation for Statistical Computing But when installing packages I read: Installing packages into

Re: [R] Package "hse" has been REPLACED by package "dbd".

2021-05-05 Thread Rolf Turner
On Mon, 3 May 2021 12:42:30 +1200 Abbs Spurdle wrote: > Previously, I disliked some of R's names. > e.g. Action of the Toes. > But then later realized toes are really important. > > I don't want to disagree with a 'reviewer'. > But I would say subtle references to literature and philosophy >

Re: [R] Package "hse" has been REPLACED by package "dbd".

2021-05-02 Thread Abbs Spurdle
Previously, I disliked some of R's names. e.g. Action of the Toes. But then later realized toes are really important. I don't want to disagree with a 'reviewer'. But I would say subtle references to literature and philosophy demonstrate 'depth'. Was your reviewer a member of the (A)merican

[R] Package "hse" has been REPLACED by package "dbd".

2021-04-30 Thread Rolf Turner
A reviewer of a paper that I wrote, of which the "hse" package was a central consideration, thought that users might find the name "hse" ("hope springs eternal") to be indicative of a lack of seriousness. Consequently I have changed the name of the package to "dbd" ("discretised beta

Re: [R] Package to generate moon phase - SR-SS

2021-03-07 Thread Duncan Murdoch
For me too: suncalc is the package. Duncan Murdoc On 07/03/2021 10:37 a.m., Jeff Newmiller wrote: Odd.. came right up for me. Perhaps you might find rseek.org easier to use? On March 7, 2021 5:03:20 AM PST, Neotropical bat risk assessments and acoustic tools wrote: Hi all I have not

Re: [R] Package to generate moon phase - SR-SS

2021-03-07 Thread Jeff Newmiller
Odd.. came right up for me. Perhaps you might find rseek.org easier to use? On March 7, 2021 5:03:20 AM PST, Neotropical bat risk assessments and acoustic tools wrote: >Hi all > >I have not found a package by Googling, but assume there must be at >least one out there. >I need to generate/write

[R] Package to generate moon phase - SR-SS

2021-03-07 Thread Neotropical bat risk assessments and acoustic tools
Hi all I have not found a package by Googling, but assume there must be at least one out there. I need to generate/write sun rise-sun set times (civil twilight) and moon phase/illumination. I would like to add a start date and end date along with location coordinates and have a table

Re: [R] Out from an R package

2021-02-25 Thread John Fox
Dear Goran, It's not clear from your question what you want to do, but my guess is that you simply what a "printout" of your results. The usual way to obtain that is via the summary() function. In your case summary(Output). That's typical of statistical modeling functions in R: They return

Re: [R] Out from an R package

2021-02-25 Thread Eric Berger
The str() function is your friend. Try str(Output) On Thu, Feb 25, 2021 at 12:09 PM David Winsemius wrote: > > On 2/25/21 7:24 AM, Göran Djurfeldt wrote: > > Help! I am going crazy for a very simple reason. I can’t access the > output from for instance the lme4 package in R. I have been able

Re: [R] Out from an R package

2021-02-25 Thread David Winsemius
On 2/25/21 7:24 AM, Göran Djurfeldt wrote: Help! I am going crazy for a very simple reason. I can’t access the output from for instance the lme4 package in R. I have been able to import an SPSS file into an R data frame. I have downloaded and installed the Lme4 package and I think I have

[R] Out from an R package

2021-02-25 Thread Göran Djurfeldt
Help! I am going crazy for a very simple reason. I can’t access the output from for instance the lme4 package in R. I have been able to import an SPSS file into an R data frame. I have downloaded and installed the Lme4 package and I think I have also learnt how to produce a mixed model with

Re: [R] package not available for R version...

2021-01-15 Thread varin sacha via R-help
Hi, Yes, I can but I don't know if it will solve my problem. I will give an attempt ! Best, Le mercredi 13 janvier 2021 à 07:41:22 UTC+1, Caitlin Gibbons a écrit : Hi. Can you upgrade your version of R? That might help. ~Caitlin > On Jan 12, 2021, at 1:08 PM, Duncan Murdoch

Re: [R] package not available for R version...

2021-01-15 Thread varin sacha via R-help
Hi, Yes, I don't really know what the maintainer will answer to me. Except that rgam is no longer on CRAN, that I already know ! However, I know mgcv and "classical" GAM model but GAMs can be very sensitive to the presence of a small proportion of observations that deviate from the assumed

Re: [R] package not available for R version...

2021-01-12 Thread Caitlin Gibbons
Hi. Can you upgrade your version of R? That might help. ~Caitlin > On Jan 12, 2021, at 1:08 PM, Duncan Murdoch wrote: > > On 12/01/2021 2:43 p.m., varin sacha via R-help wrote: >> Dear R-experts, >> I have tried to reach the maintainer of the rgam package. Until now, no >> response. >>

Re: [R] package not available for R version...

2021-01-12 Thread Abby Spurdle
It's not clear from your post why you're trying to contact the maintainer. But it gives the impression you're trying to contact the maintainer, of an archived package, because you can't install the package. It's not their responsibility to respond to these kinds of questions. Also, I note the

Re: [R] package not available for R version...

2021-01-12 Thread Duncan Murdoch
On 12/01/2021 2:43 p.m., varin sacha via R-help wrote: Dear R-experts, I have tried to reach the maintainer of the rgam package. Until now, no response. Since I'm in a bit of a hurry, I try to reach you because as I try to install the rgam package using the command : install.packages("rgam")

[R] package not available for R version...

2021-01-12 Thread varin sacha via R-help
Dear R-experts, I have tried to reach the maintainer of the rgam package. Until now, no response. Since I'm in a bit of a hurry, I try to reach you because as I try to install the rgam package using the command : install.packages("rgam") I get this warning message : Warning message:

Re: [ESS] Using the R package styler to format buffer (problems with Rmd files)

2020-11-03 Thread Sven Hartenstein via ESS-help
Dear ESS users and developers, answering my own request, this is what I came up with: (defun my-r-styler () "Style the current buffer's file (.R, .Rmd, .Rnw) with the styler R package." (interactive "*") (shell-command (concat "Rscript --slave --no-restore -

Re: [R] Package recommendations for outputting table with cell formatting

2020-10-23 Thread John Kane
This comes with no guarantee since i have only tried one or two packages mentioned but have a look at https://rfortherestofus.com/2019/11/how-to-make-beautiful-tables-in-r/;> R Tables. On Fri, 23 Oct 2020 at 20:28, Dennis Fisher wrote: > R 4.0.2 > OS X > > Colleagues > > I have the unfortunate

Re: [R] Package recommendations for outputting table with cell formatting

2020-10-23 Thread Dennis Fisher
Patrick Doing this in Excel is certainly an option. But I would like to learn how to do it in R. Dennis Dennis Fisher MD P < (The "P Less Than" Company) Phone / Fax: 1-866-PLessThan (1-866-753-7784) www.PLessThan.com > On Oct 23, 2020, at 6:15 PM, Patrick (Malone Quantitative) > wrote:

Re: [R] Package recommendations for outputting table with cell formatting

2020-10-23 Thread Patrick (Malone Quantitative)
Will this need to be done many times? If not, it might be just as easy to apply conditional formatting to cells after they're already in Excel. On Fri, Oct 23, 2020 at 8:28 PM Dennis Fisher wrote: > > R 4.0.2 > OS X > > Colleagues > > I have the unfortunate need to create a large number of

[R] Package recommendations for outputting table with cell formatting

2020-10-23 Thread Dennis Fisher
R 4.0.2 OS X Colleagues I have the unfortunate need to create a large number of tables (destined for a Word document). I need to color cells depending on the contents, e.g., blue if the value is < 0.5, red if the value is > 1.5. If the output went initially to Excel, that would work;

Re: [R] package(moments) issue

2020-10-16 Thread Sania Wadud
Hi Bill, Thanks for rectifying the issue. It seems to be a cube root of a negative real issue. After updating the function it's working fine and showing the correct results. I highly appreciate your help. Best wishes, Sania On Fri, 16 Oct 2020 at 00:36, Bill Dunlap wrote: > Another bad case

Re: [R] package(moments) issue

2020-10-16 Thread Sania Wadud
Hi Bill, Thanks for prompt reply and letting me know a way around it. I have more than 1200 observations and not all the values are the same. However, my data points are quite similar, for example, 0.079275, 0.078867, 0.070716 in millions and etc. I have run the data without converting it to

Re: [R] package(moments) issue

2020-10-15 Thread Bill Dunlap
Another bad case is > moments::anscombe.test(rep(c(1,1.1),length=35)) Error in if (pval > 1) pval <- 2 - pval : missing value where TRUE/FALSE needed I haven't checked the formulas carefully, but I suspect the problem is from taking the cube root of a negative number in z <- (1

Re: [R] package(moments) issue

2020-10-15 Thread Bill Dunlap
moments::anscombe.test(x) does give errors when x has too few values or if all the values in x are the same > moments::anscombe.test(c(1,2,6)) Error in if (pval > 1) pval <- 2 - pval : missing value where TRUE/FALSE needed > moments::anscombe.test(c(2,2,2,2,2,2,2,2)) Error in if (pval > 1) pval

[R] package(moments) issue

2020-10-15 Thread Sania Wadud
Hi all, While running the anscombe.test in R, I'm getting an error of *Error in if (pval > 1) pval <- 2 - pval : missing value where TRUE/FALSE needed* for a few time series columns whereas for most of the series the function is working fine. I have checked for those specific columns for missing

[R] package for kernel on R

2020-10-13 Thread Ablaye Ngalaba
Hello, Please, I want to know which package to install on R when coding the kernel functions [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help

Re: [R] Installing bioconduction packages in connection with loading an R package

2020-10-12 Thread Martin Morgan
An alternative to setRepositories() is use of (the CRAN package) BiocManager::install("gRbase") instead of install.packages(). BiocManager installs CRAN packages as well as Bioconductor packages. Another, more transparent, solution is to use install.packages("gRbase", repos =

Re: [R] Installing bioconduction packages in connection with loading an R package

2020-10-11 Thread Bert Gunter
You would do better posting this on r-package-devel rather than here, I believe. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Sun, Oct

  1   2   3   4   5   6   7   8   9   10   >