Re: [R-sig-phylo] fatal error plotting trees

Hi, This kind of issue was reported some time ago and there is an item in ape's FAQ: http://ape-package.ird.fr/ape_faq.html#Bayestrees But your situation seems a bit different. You may also check the tree with checkValidPhylo() to have a diagnostic of what's wrong. Best, Emmanuel Le

Re: [R-sig-phylo] fatal error plotting trees

...it turns out the fatal error was caused by taxon numbering issues - basically, my tree was stored in nexus format and my taxon numbering under "translate" in the trees block were not continuous - I think some were pruned but the numbering still reflected those in the full original tree. I got

Re: [R-sig-phylo] fatal error plotting trees

Manabu- Can you give us a reproducible example? Is it as simple as plotting any tree does it or is it only particular trees? Cheers, -Dave On Fri, Oct 28, 2016 at 7:53 AM, Manabu Sakamoto wrote: > Dear List, > > I'm getting fatal errors when plotting phylo objects,

[R-sig-phylo] fatal error plotting trees

Dear List, I'm getting fatal errors when plotting phylo objects, which terminates the RStudio session. RStudio started showing me warnings from around last week or so, stating that something was wrong and that if it wasn't fixed, it will be fatal in the next update. I haven't updated R or RStudio