Re: [R-sig-phylo] Comparing support values on different trees

2016-12-16 Thread Emmanuel Paradis
Hi Frank, It seems that you can use the (apparently not used a lot) option from makeNodeLabel(, method = "md5sum") which creates node labels with the MD5SUM algorithm using the tip labels descending from each node (considering the tree as rooted). The result is, for each node, a label that

Re: [R-sig-phylo] ape chronos error

2016-12-16 Thread Emmanuel Paradis
Hi Riana, It's difficult to answer your question. Can you send some sample data to reproduce this error? Best, Emmanuel Le 15/12/2016 à 22:58, Riana Rishad Minocher a écrit : Hi, I’m writing with an issue using the chronos function in ape: I have a rooted supertree of 186 taxa (genetic &

Re: [R-sig-phylo] Comparing support values on different trees

2016-12-16 Thread Frank T Burbrink
Hi Everyone, Thank you Jacob, Keith and Emmanuel for your responses. What I am trying to do is a little different than what the solutions posted here would do. I am not important a distribution of trees, but rather a single tree with the support values already included. So imagine something

Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda

2016-12-16 Thread Chen, Ting-Wen
Hi Carmelo, thank you so much for the suggestions. =) All the best Ting-Wen -- Ting-Wen Chen J.F. Blumenbach Institute of Zoology and Anthropology Georg August University Goettingen Berliner Str. 28 D-37073 Goettingen, Germany Tel: +49-55139-10943