[R-sig-phylo] Standardising independent contrasts

of each contrast? I would greatly appreciate any kind support on this matter. Many thanks in advance, Manabu Sakamoto -- -- M. Sakamoto, PhD Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queen's Road, Bristol BS8 1RJ, UK m.sakam

[R-sig-phylo] Blomberg's K and assumptions regarding independent contrasts

and branch lengths be the original untransformed values? I have the vague sense that it would be circular to make sure the data/branch lengths conform to BM and then test for deviations from BM by computing K. Or am I wrong to think this way? many thanks, Manabu Manabu Sakamoto, PhD Postdoctoral

Re: [R-sig-phylo] Identify nodes along a pathway from root to a given tip

Dear Klaus, Thank you very much! I got to Descendants but just missed Ancestors Manabu On 4 November 2014 13:15, Klaus Schliep klaus.schl...@gmail.com wrote: Hello Manabu, try Ancestors from phangorn. Regards Klaus Am 04.11.2014 08:12 schrieb Manabu Sakamoto manabu.sakam...@gmail.com

Re: [R-sig-phylo] Pagel 94 Baysian Version 3 states?

_ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ -- Manabu Sakamoto, P

Re: [R-sig-phylo] estimating the evolutionary rate of a continous trait

t; R-sig-phylo mailing list - R-sig-phylo@r-project.org R-sig-phylo@r-project.org> > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > http://www.mail-archive.com/r-sig-phylo@r-project.org/ > > > [[alternative HTML version deleted]] > &

Re: [R-sig-phylo] statistical tests for phylogenetic independent contrasts

putational and Integrative Sciences, > Jawaharlal Nehru University, New Delhi > > [[alternative HTML version deleted]] > > ___ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at > htt

Re: [R-sig-phylo] fatal error plotting trees

> > Can you give us a reproducible example? Is it as simple as plotting > any tree does it or is it only particular trees? > > Cheers, > -Dave > > On Fri, Oct 28, 2016 at 7:53 AM, Manabu Sakamoto > <manabu.sakam...@gmail.com> wrote: > > Dear List, > > > >

[R-sig-phylo] fatal error plotting trees

xit R without saving workspace 4: exit R saving workspace Has anyone been encountering this issue, or know what the cause is? thanks, Manabu -- Manabu Sakamoto, PhD manabu.sakam...@gmail.com [[alternative HTML version deleted]] ___ R-sig-phylo mailin

Re: [R-sig-phylo] Zero inflated model accounting for phylogeny

R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r- > sig-ph...@r-project.org/ > -- Manabu Sakamoto, PhD manabu.sakam...@gmail.com [[alternative HTML version deleted]] ___

Re: [R-sig-phylo] Measuring Phylogenetic Signal

t; >> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > >> Searchable archive at http://www.mail-archive.com/r- > >> sig-ph...@r-project.org/ > >> > >> > > ___ > > R-sig-phylo mailing list - R-sig-phy