, Aug 22, 2013 at 5:09 PM, Naxerova, Kamila
naxer...@fas.harvard.edumailto:naxer...@fas.harvard.edu wrote:
Dear list,
is there a function that will take a tree and the output of boot.phylo() and
collapse branches below a chosen bootstrap value cutoff?
Many thanks.
Kamila
So sorry for the silly question, I overlooked your show.node=T.
Many thanks.
Kamila
On Aug 22, 2013, at 12:29 PM, Naxerova, Kamila naxer...@fas.harvard.edu
wrote:
Thank you Klaus, this works like a charm. One more if I may: If I still want
to have bootstrap values in my plot, how do I go
:51 PM, Naxerova, Kamila wrote:
Dear list,
I have just started playing around with ape, and I have some naive newbie
questions. Any help would be very much appreciated.
1) In my data set, the root is extant. Is there a way to directly designate
one of the taxa as the root?
2) When I use
Dear list,
I would like to construct a neighbor-joining tree from a data set in which each
taxon is characterized by a vector of integers ranging from 0 to 5. I would
like to treat these as unordered characters, i.e. assuming that the likelihood
of transitioning from 0 to 1 is the same as
