Hi Emmanuel,
agree looks cool. When do you want to push the new version to CRAN? Newest
phangorn development has now a as.AAbin.phyDat function and dist.ml has
transition rate matrices for amino acids.
Does anybody know how to set .travis.yaml on github to install ape from
Emmanuel's repository
FYI, in case one wants to install the testing version of ape to
R-devel (in my case, also a Windows machine), I found I needed:
install.packages("ape",contriburl="http://ape-package.ird.fr/bin/windows/contrib/3.2;)
Emmanuel, I've tested the testing version with paleotree and a few
other projects
Hi Emmanuel,
this looks really cool - especially the new AAbin class. Looking forward to
playing with the new version!
Best
Thibaut
--
Dr Thibaut Jombart
Lecturer, Department of Infectious Disease Epidemiology
Imperial College London
https://sites.google.com/site/thibautjombart/
Dear all,
A new testing version of ape (3.4-0.3) is available. It includes three
main new features:
- A new data class, "AAbin", to store amino acid sequences; there are
eleven new functions to generate and manipulate them including
translation from DNA.
- The function checkAlignment does
